RetrogeneDB ID: | retro_omer_1 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 1:18886319..18887414(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI01G17740 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI01G33590 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.82 % |
Parental protein coverage: | 77.17 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPYATADSSLRAMAGQAEGFGRHAIGGLHGDVYHVTTLEDDGDGSLREGCRRREPLWIVFDVSGTIHLST |
MPYA.AD..LRA.AG.AEGFGR.AIGGLHG..Y.VT.L.DDG.G.LR..CR...PLWIVFDVSG.IHL.T | |
Retrocopy | MPYADADRTLRALAGAAEGFGRRAIGGLHGPLYRVTSLDDDGHGTLRQACRAHGPLWIVFDVSGDIHLRT |
Parental | GLRVSSYKTIDGRGQRVTLSGKGLQLRECEHVIVCNLEVEGCRGHDADAVAVKPGSRHVWIDRCGLRGCG |
.LRV.S.KTIDGRGQRV.L.GKGLQL.EC.HVIVCNL..EG.RGHD.DA...KP.S...WIDRC.L..C. | |
Retrocopy | YLRVTSHKTIDGRGQRVRLLGKGLQLKECRHVIVCNLQIEGGRGHDVDAIQIKPSSADIWIDRCSLADCD |
Parental | DGLLDVTRGSTDVTVSRCRFSAHDKAVLIGGSAGHVEDRAIRVTIHHCLFDGTRQRHPRVRFGRVHLYNN |
DGL.D.TRGSTDVTVSRCRFS.HDK..L.G....H..DR.IRVTIHHC.FDGTRQRHPRVRFGR.HLYNN | |
Retrocopy | DGLVDITRGSTDVTVSRCRFSRHDKTMLVGADPSHTGDRGIRVTIHHCFFDGTRQRHPRVRFGRAHLYNN |
Parental | YTRGWGIYAVCASVESQIVSQCNIYEAG-EKKKVFKYMTEQAADRDQSSTGFIRSEGDLFLNGAEECAAH |
YTRGWGIYAV.A.VE.Q..SQCN.YEAG.E.K.VF.Y..E.AADR.....G..RSEGD.FLNGA..C... | |
Retrocopy | YTRGWGIYAVAAGVEAQVASQCNVYEAGAETKAVFRYVPERAADREEAEAGWVRSEGDAFLNGAQPCLVD |
Parental | DSEAA |
...AA | |
Retrocopy | GGDAA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA004758 | 1 retrocopy | |
Leersia perrieri | LPERR01G31380 | 1 retrocopy | |
Oryza meridionalis | OMERI01G33590 | 1 retrocopy |
retro_omer_1 ,
|
Oryza nivara | ONIVA01G41460 | 1 retrocopy | |
Oryza punctata | OPUNC01G35260 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0303100 | 1 retrocopy | |
Oryza sativa japonica | OS01G0837100 | 1 retrocopy |