Parental gene: | OPUNC07G17520 |
| Aliases: | None |
| Description: | None |
| Organism: | Red rice (Oryza punctata) |
| Coordinates: | 7:24182656..24184961(-) |
>OPUNC07G17520
ATGGCCGGCGGCGTGGTGGTGAACAACGGAGGGGGGAAGGACTACCCCGGGAAACTCACCATGTTCGTCCTCTTCGCCTG
CATCGTCGCCGCCACCGGCGGCCTCATCTTCGGATATGACATCGGCATCTCCGGGGGGGTGACGTCGATGAACCCGTTCC
TGATCAAGTTCTTCCCGTCTGTGTACCGGAAGGAGCAGGCGGCGGAGAAGAACCAGAGCAACCAGTACTGCAAGTTCGAC
AGCCCGCTGCTGACCATGTTCACCTCGTCGCTCTACCTCGCCGCGCTCGTCGCCTCCTTCTTCGCGTCCACCGTCACCCG
CGTCGCGGGGCGCAAGTGGTCCATGTTCGGGGGCGGCGTCACCTTCCTCGTCGGCGCCGCGCTCAACGGCGCGGCCAAGA
ACGTGCTTATGCTCATCCTCGGCCGCGTCCTCCTCGGTATCGGCGTCGGCTTCGCCAACCAGTCTGTGCCGCTGTACCTG
TCGGAGATGGCGCCAGCGAGGCTGCGCGGGATGCTCAACATCGGGTTCCAGCTGATGATCACCATTGGCATCCTGTGCGC
GAACCTGATCAACTACGGGACGGCCAAGATCAAGGGCGGGTGGGGGTGGCGCGTGAGCCTGGCGCTGGCGGCGGTGCCGG
CGGCGATCATCGCCGTGGGCGCGCTCTTCCTCCCTGACACGCCCAACTCCCTCATCGACCGCGGCCACACCGACGCCGCC
AAGCGCATGCTCCGGCGCGTGCGCGGCACCGACGACATCGAGGAGGAGTACAACGACCTGGTTGCCGCCAGCGAGGAGTC
CAAGCTCGTGGCGCACCCATGGCGGAACATCCTCCAGCGCCGGTACAGGCCGCAGCTGACCATGGCCATCGCCATCCCGC
TGTTCCAGCAGCTGACGGGGATCAACGTCATCATGTTCTACGCTCCGGTGTTGTTCAAGACGCTGGGCTTCGCCGACGAC
GCGTCCCTCATGTCCGCCGTGATCACCGGCCTCGTCAACGTCTTCGCCACCTTCGTGTCCATCGTCACCGTCGACCGCCT
CGGCCGCCGGAAGCTGTTCCTCCAGGGCGGGACACAGATGCTGGCGTGCCAGATCGTCGTCGGCAGCCTCATCGGCGCCA
AGTTCGGGTTCTCCGGCGTGGCCGACATCCCCAAGGCGTACGCGGCGTTCGTGGTGCTCTTCATCTGCGCCTACGTCGCC
GGGTTCGCGTGGTCGTGGGGGCCCCTGGGTTGGCTCGTCCCCAGCGAGATCTTCCCGCTGGAGATCAGGTCGGCAGGGCA
GAGCATCAACGTGTCGGTGAACATGCTCTTCACCTTCATCATCGCGCAGGCGTTCCTCCCCATGCTCTGCCGCTTCAAGT
TCATCCTCTTCTTCTTCTTCGGCGCGTGGGTGGTGATCATGACGCTGTTCGTCGCCTTCTTCCTGCCGGAGACCAAGAAT
GTGCCCATCGAGGAGATGGTGCTCGTCTGGAAGTCGCACTGGTACTGGGGCAGGTTCATCCGCGACGAGGACGTGCACGT
CGGCGCCGACGTCGAGATGCCCGCCGCCGGCAACCGCAACGGCAAGGTCGACCCGGCCAAGCTCGCCAACTGA
ATGGCCGGCGGCGTGGTGGTGAACAACGGAGGGGGGAAGGACTACCCCGGGAAACTCACCATGTTCGTCCTCTTCGCCTG
CATCGTCGCCGCCACCGGCGGCCTCATCTTCGGATATGACATCGGCATCTCCGGGGGGGTGACGTCGATGAACCCGTTCC
TGATCAAGTTCTTCCCGTCTGTGTACCGGAAGGAGCAGGCGGCGGAGAAGAACCAGAGCAACCAGTACTGCAAGTTCGAC
AGCCCGCTGCTGACCATGTTCACCTCGTCGCTCTACCTCGCCGCGCTCGTCGCCTCCTTCTTCGCGTCCACCGTCACCCG
CGTCGCGGGGCGCAAGTGGTCCATGTTCGGGGGCGGCGTCACCTTCCTCGTCGGCGCCGCGCTCAACGGCGCGGCCAAGA
ACGTGCTTATGCTCATCCTCGGCCGCGTCCTCCTCGGTATCGGCGTCGGCTTCGCCAACCAGTCTGTGCCGCTGTACCTG
TCGGAGATGGCGCCAGCGAGGCTGCGCGGGATGCTCAACATCGGGTTCCAGCTGATGATCACCATTGGCATCCTGTGCGC
GAACCTGATCAACTACGGGACGGCCAAGATCAAGGGCGGGTGGGGGTGGCGCGTGAGCCTGGCGCTGGCGGCGGTGCCGG
CGGCGATCATCGCCGTGGGCGCGCTCTTCCTCCCTGACACGCCCAACTCCCTCATCGACCGCGGCCACACCGACGCCGCC
AAGCGCATGCTCCGGCGCGTGCGCGGCACCGACGACATCGAGGAGGAGTACAACGACCTGGTTGCCGCCAGCGAGGAGTC
CAAGCTCGTGGCGCACCCATGGCGGAACATCCTCCAGCGCCGGTACAGGCCGCAGCTGACCATGGCCATCGCCATCCCGC
TGTTCCAGCAGCTGACGGGGATCAACGTCATCATGTTCTACGCTCCGGTGTTGTTCAAGACGCTGGGCTTCGCCGACGAC
GCGTCCCTCATGTCCGCCGTGATCACCGGCCTCGTCAACGTCTTCGCCACCTTCGTGTCCATCGTCACCGTCGACCGCCT
CGGCCGCCGGAAGCTGTTCCTCCAGGGCGGGACACAGATGCTGGCGTGCCAGATCGTCGTCGGCAGCCTCATCGGCGCCA
AGTTCGGGTTCTCCGGCGTGGCCGACATCCCCAAGGCGTACGCGGCGTTCGTGGTGCTCTTCATCTGCGCCTACGTCGCC
GGGTTCGCGTGGTCGTGGGGGCCCCTGGGTTGGCTCGTCCCCAGCGAGATCTTCCCGCTGGAGATCAGGTCGGCAGGGCA
GAGCATCAACGTGTCGGTGAACATGCTCTTCACCTTCATCATCGCGCAGGCGTTCCTCCCCATGCTCTGCCGCTTCAAGT
TCATCCTCTTCTTCTTCTTCGGCGCGTGGGTGGTGATCATGACGCTGTTCGTCGCCTTCTTCCTGCCGGAGACCAAGAAT
GTGCCCATCGAGGAGATGGTGCTCGTCTGGAAGTCGCACTGGTACTGGGGCAGGTTCATCCGCGACGAGGACGTGCACGT
CGGCGCCGACGTCGAGATGCCCGCCGCCGGCAACCGCAACGGCAAGGTCGACCCGGCCAAGCTCGCCAACTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Brachypodium distachyon | BRADI1G24820 | ortholog_one2one | 1 retrogene | |
| Hordeum vulgare | MLOC_55525 | ortholog_one2one | 1 retrogene | |
| Medicago truncatula | MTR_0009s0370 | ortholog_many2many | 1 retrogene | |
| Oryza glumaepatula | OGLUM07G18360 | ortholog_one2one | 1 retrogene | |
| Oryza meridionalis | OMERI07G15470 | ortholog_one2one | 2 retrogenes | |
| Oryza nivara | ONIVA07G16940 | ortholog_one2one | 1 retrogene | |
| Oryza glaberrima | ORGLA07G0149800 | ortholog_one2one | 1 retrogene | |
| Oryza rufipogon | ORUFI07G19310 | ortholog_one2one | 1 retrogene | |
| Oryza sativa japonica | OS07G0559700 | ortholog_one2one | 1 retrogene | |
| Triticum aestivum | Traes_2BS_7DF366FE1 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_opun_36 | 72.48 | 95.28 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all OPUNC07G17520 retrocopies