RetrogeneDB ID: | retro_hvul_80 | ||
Retrocopylocation | Organism: | Barley (Hordeum vulgare) | |
Coordinates: | 5:350115270..350116749(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | MLOC_55525 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.95 % |
Parental protein coverage: | 93.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | TMFVLFACIVAATGGLIFGYDIGISGGVTSMNPFLMKFFPGVYHKEQEAERNQSNQYCKFDSQLLTMFTS |
T.FV..AC.VAATGGLIFGYDIGISGGVTSM.PFL.KFFP.VY.K..EA.....NQYCKFDSQ.LTMFTS | |
Retrocopy | TLFVFMACLVAATGGLIFGYDIGISGGVTSMDPFLSKFFPSVYRKQAEAA--DDNQYCKFDSQILTMFTS |
Parental | SLYLAALVASFFAATVSRVAGRKWSMFAGGVTFLVGAALNGAAKNVLMLILGRVLLGIGVGFANQSVPVY |
SLYLAALVAS.FAA.V.RVAGRKWSMF.GG.TFLVG.ALNGAA.N..MLILGRV.LG.GVGFANQSVPVY | |
Retrocopy | SLYLAALVASLFAASVTRVAGRKWSMFVGGITFLVGCALNGAAENMAMLILGRVFLGVGVGFANQSVPVY |
Parental | LSEMAPARLRGMLNIGFQLMVTIGILCANLINYGTSKIKGGWGWRVSLALAAVPAGIIAIGALFLPDTPN |
LSEMAPA..RGMLN.GFQLM.T.GIL.ANLINYGT.KI..GWGWR.SLALAAVPA.II.IG.LFLPDTPN | |
Retrocopy | LSEMAPAKMRGMLNNGFQLMITLGILAANLINYGTAKIAAGWGWRLSLALAAVPAAIITIGSLFLPDTPN |
Parental | SLIDRGYTDDAKKMLRRVRGTDDVEEEYSDLVAASDESKLVSHPWRNILQRRYRPQLTFAIAIPFFQQLT |
SL..RG..DDA..ML.RVRG...V.EEY.DL.AAS..S.....PWR.IL.RRYRPQL..A.AIP..QQLT | |
Retrocopy | SLLERGKADDARRMLQRVRGIQYVDEEYHDLAAASEASSAIKRPWRDILRRRYRPQLVMAVAIPLLQQLT |
Parental | GINVIMFYAPVLFKTLGFADDASLMSAVITGLVNVFATFVSIVTVDRLGRRKLFLQGGTQMLACQIVVGS |
GINVIMFYAPVLFKTLGF...ASLMSAVITG.VN..AT.VSI.TVDR.GRR.L.LQGG.QM...Q..VG. | |
Retrocopy | GINVIMFYAPVLFKTLGFGGSASLMSAVITGGVNLAATLVSIFTVDRVGRRALLLQGGAQMFVSQVAVGA |
Parental | LIGAKFGFTGVADIPRGYAAFVVFFICAYVAGFAWSWGPLGWLVPSEIFPLEIRSAGQSITVSMNMLCTF |
LIGAK.G..GVA.IP.GYAA.VV...C.YVAGFAWSWGPLGWLVPSE..PLE.R.AGQSITV..NML.TF | |
Retrocopy | LIGAKLGWSGVAEIPAGYAAAVVVVMCVYVAGFAWSWGPLGWLVPSEVMPLEVRPAGQSITVAVNMLMTF |
Parental | IIAQAFLPMLCRFKFMLFFFFGAWVIVMTLFVAFFLPETKNVPIEEMVLVWKAHWYWGRFIRDE-DVHVG |
..AQAFLPMLCR.KF.LFFFF.AWV..MTLFVA.F.PETK.VPIE.M..VWKAHWYW.RF..D..D.... | |
Retrocopy | VVAQAFLPMLCRLKFVLFFFFAAWVAAMTLFVALFVPETKGVPIEDMANVWKAHWYWKRFVTDDGDAPRR |
Parental | ADVEM |
ADVEM | |
Retrocopy | ADVEM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI1G24820 | 1 retrocopy | |
Hordeum vulgare | MLOC_55525 | 1 retrocopy |
retro_hvul_80 ,
|
Medicago truncatula | MTR_0009s0370 | 1 retrocopy | |
Oryza glumaepatula | OGLUM07G18360 | 1 retrocopy | |
Oryza meridionalis | OMERI07G15470 | 2 retrocopies | |
Oryza nivara | ONIVA07G16940 | 1 retrocopy | |
Oryza punctata | OPUNC07G17520 | 1 retrocopy | |
Oryza glaberrima | ORGLA07G0149800 | 1 retrocopy | |
Oryza rufipogon | ORUFI07G19310 | 1 retrocopy | |
Oryza sativa japonica | OS07G0559700 | 1 retrocopy | |
Triticum aestivum | Traes_2BS_7DF366FE1 | 1 retrocopy |