Parental gene: | OS01G0559600 |
| Aliases: | None |
| Description: | Os01g0559600 protein; Putative C13 endopeptidase NP1; cDNA clone:J013108L21, full insert sequence [Source:UniProtKB/TrEMBL;Acc:Q7F1B4] |
| Organism: | Rice subsp. japonica (Oryza sativa japonica) |
| Coordinates: | 1:21230392..21234906(+) |
>OS01G0559600
ATGGCGGCGCGCGCTCGCCTCCGCCTCGTCCTGCCCCCGCTCGCGGCGCTGCTCCTCTTCGCGCACCTCGCCGCCGTCGC
GGTGGCGCGGCCGCGGTGGGAGGAGGAGGGCAGCAACCTCCGCCTGCCGTCGGAGCGCGCCGTGGCGGCTGGCGCGGCGG
CGGACGACGCTGCCGAGGCCGCCGAGGGCACCAGGTGGGCCGTCCTCATCGCCGGCTCCAACGGCTACTACAACTACCGC
CACCAGGCGGATGTCTGCCATGCCTACCAGATCATGAAGAGGGGCGGGCTCAAGGACGAGAACATCATCGTCTTCATGTA
CGATGACATCGCGCACAACCCGGAGAATCCGAGGCCTGGTGTCATCATCAACCATCCCCAGGGTGGCGATGTCTATGCTG
GGGTCCCGAAGGATTACACTGGGAAGGAGGTTAATGTCAAAAACTTGTTTGCTGTTCTGCTCGGTAACAAAACTGCTGTC
AAAGGTGGGAGTGGCAAAGTCCTGGACAGTGGCCCCAACGATCATATTTTCATTTTTTACAGTGACCATGGGGGTCCTGG
TGTCCTTGGGATGCCAACCTATCCATACCTCTACGGTGATGATCTTGTAGATGTTCTGAAGAAGAAGCATGCTGCTGGGA
CGTACAAAAGCCTGGTCTTTTACCTTGAAGCCTGTGAATCTGGAAGCATCTTTGAGGGTCTATTGCCAAATGGCATCAAT
GTTTATGCCACCACTGCATCAAACGCTGATGAGAGCAGCTGGGGAACATACTGCCCTGGGGAGTACCCGAGCCCACCTCC
GGAGTACGACACATGCCTAGGGGACTTGTACAGCGTTGCTTGGATGGAAGACAGCGATGTCCACAACCTGAGAACTGAAT
CACTCAAGCAGCAGTACAATCTCGTCAAGGAAAGGACATCTGTGCAGCACACATATTACTCTGGGTCACATGTGATGGAA
TACGGTTCTTTAGAGCTGAATGCCCATCATGTGTTCATGTACATGGGTTCCAATCCGGCTAACGACAATGCTACATTTGT
GGAAGATAACTCGTTGCCATCGTTCTCAAGGGCTGTTAATCAGCGGGATGCTGACCTGGTTTACTTCTGGCAGAAGTACC
GCAAATTGCCTGAGAGTTCTCCTGAGAAAAACGAAGCTCGGAAGCAATTGCTTGAAATGATGGCACACAGATCTCATGTT
GACAACAGTGTTGAGCTGATCGGAAACCTTCTCTTTGGCTCTGAGGAAGGCCCAAGGGTTCTAAAGGCTGTTCGTGCAAC
TGGCGAACCTCTTGTTGATGACTGGAGTTGTCTCAAGTCTATGGTACGCACTTTCGAAGCACAATGCGGCTCGCTAGCGC
AGTATGGAATGAAGCATATGCGTTCCTTTGCAAACATCTGCAATGCTGGCATCTCTGCTGAAGCGATGGCAAAGGTTGCT
GCGCAGGCTTGCACCAGCATTCCCTCCAACCCCTGGAGTTCCACCCATAGGGGTTTTAGTGCTTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Zea mays | GRMZM2G093032 | ortholog_one2many | 1 retrogene | |
| Oryza longistaminata | KN538817.1_FG009 | ortholog_one2one | 1 retrogene | |
| Oryza brachyantha | OB01G29280 | ortholog_one2one | 1 retrogene | |
| Oryza barthii | OBART01G19640 | ortholog_one2one | 1 retrogene | |
| Oryza glumaepatula | OGLUM01G23260 | ortholog_one2one | 1 retrogene | |
| Oryza meridionalis | OMERI01G18100 | ortholog_one2one | 1 retrogene | |
| Oryza punctata | OPUNC01G20010 | ortholog_one2one | 1 retrogene | |
| Oryza glaberrima | ORGLA01G0161200 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_osat_9 | 68.40 | 56.29 | Please wait, loading  |
Please wait, loading |
Please wait, loading |
Download FASTA sequences of all OS01G0559600 retrocopies