RetrogeneDB ID: | retro_omer_24 | ||
Retrocopylocation | Organism: | Oryza meridionalis | |
Coordinates: | 5:26406259..26407651(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | OMERI05G23900 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | OMERI01G18100 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.23 % |
Parental protein coverage: | 56.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AEGTRWAVLIAGSNGYYNYRHQADVCHAYQIMKRGGLKDENIIVFMYDDIAHNPENPRPGVIINHPQGGD |
A..TRWAVLIAGSNG.YNYRHQADVCHAYQIM..GG...ENI.V.MYDDIAHNP.NPRPG.I.NHP.G.D | |
Retrocopy | ASATRWAVLIAGSNGFYNYRHQADVCHAYQIMRKGGVEEENIVVMMYDDIAHNPDNPRPGLIFNHPSGPD |
Parental | VYAGVPKDYTGKEVNVKNLFAVLLGNKTAVKG-GSGKVLDSGPNDHIFIFYSDHGGPGVLGMPT-YPYLY |
VYAGVPKDYTG..VNV.N..AVLLGN..A..G.GSGKV..SGPNDH.F..Y.DHGGPGVL.MP....YLY | |
Retrocopy | VYAGVPKDYTGDDVNVNNFLAVLLGNRSALTGSGSGKVVASGPNDHVFVYYADHGGPGVLSMPADGEYLY |
Parental | GDDLVDVLKKKHAAGTYKSLVFYLEACESGSIFEGLLPNDINVYATTASNADESSWGTYCPG-EYPSPPP |
.DDLV..LKKKHAAG.YKSLV.Y.EACESGSIFEGLLP..I.VYATTASNA.ESSWGTYCPG.....P.. | |
Retrocopy | ADDLVKALKKKHAAGGYKSLVVYVEACESGSIFEGLLPGNISVYATTASNAEESSWGTYCPGDDHDAPAA |
Parental | EYDTCLGDLYSVAWMEDSDVH--NLRTESLKQQYNLVKERTSVQHTYYSGSHVMEYGSLELNAHHV-FMY |
E.DTCLGDLYSVAWMED...H......E.L.QQY..VK.RTS...TY..GSHVM.YG...L........Y | |
Retrocopy | EFDTCLGDLYSVAWMEDAEAHQEGRLAETLRQQYRTVKNRTSDEGTYTLGSHVMQYGDMALAPQSLDLYY |
Parental | MGSNPA |
M...PA | |
Retrocopy | MDTSPA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Zea mays | GRMZM2G093032 | 1 retrocopy | |
Oryza longistaminata | KN538817.1_FG009 | 1 retrocopy | |
Oryza brachyantha | OB01G29280 | 1 retrocopy | |
Oryza barthii | OBART01G19640 | 1 retrocopy | |
Oryza glumaepatula | OGLUM01G23260 | 1 retrocopy | |
Oryza meridionalis | OMERI01G18100 | 1 retrocopy |
retro_omer_24 ,
|
Oryza punctata | OPUNC01G20010 | 1 retrocopy | |
Oryza glaberrima | ORGLA01G0161200 | 1 retrocopy | |
Oryza sativa japonica | OS01G0559600 | 1 retrocopy |