RetrogeneDB ID: | retro_acar_139 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 5:66250851..66251351(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDCA8 | ||
Ensembl ID: | ENSACAG00000028556 | ||
Aliases: | None | ||
Description: | cell division cycle associated 8 [Source:HGNC Symbol;Acc:14629] |
Percent Identity: | 63.31 % |
Parental protein coverage: | 54.95 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ILPLRKRSRQEDEAPIPLPPEQ--KPLTGKRSTRKPPTARKC-RPPSSRLNQSRASKGKLTTPVSSNGRS |
.LPLR.R..QE...PIP.PPE...KP..G..S....P.AR...R.PSSR.NQ.RASK.KL.TPV...G.S | |
Retrocopy | VLPLRERLHQEEGTPIPFPPEPE*KPNNGNWSKMDAPIARRV<RQPSSR*NQ-RASKDKLSTPVLPKGGS |
Parental | A--AIT---TPGFAPRFDSSIFKTPGLRAPASHEPVFSVSANGSPLAGSSDVFVTLPIGKGESIRVKASD |
A..AIT...T.GFAPRFD.SIFKT.GL.A.ASHEP.FS...NGSPLAGS..VF.TL...KGESI.VK.SD | |
Retrocopy | AATAITQGVTLGFAPRFDFSIFKTSGLWASASHEPIFSIFTNGSPLAGSRNVFITLLASKGESICVKVSD |
Parental | LTEKDLLRLNPSALGSMKKLSAQVLRLCK |
LTEKDLLRLN...L.S..KLSAQ.L.LCK | |
Retrocopy | LTEKDLLRLNQAILCSTRKLSAQILHLCK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 2 .00 RPM |
SRP009831_brain | 0 .00 RPM | 0 .33 RPM |
SRP009831_dewlap | 0 .00 RPM | 10 .59 RPM |
SRP009831_embryo | 0 .00 RPM | 79 .52 RPM |
SRP009831_heart | 0 .00 RPM | 0 .93 RPM |
SRP009831_liver | 0 .00 RPM | 4 .50 RPM |
SRP009831_lung | 0 .00 RPM | 1 .96 RPM |
SRP009831_ovary | 0 .00 RPM | 31 .85 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000028556 | 2 retrocopies |
retro_acar_139 , retro_acar_200,
|
Choloepus hoffmanni | ENSCHOG00000004959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002008 | 1 retrocopy | |
Homo sapiens | ENSG00000134690 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007719 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011926 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014340 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001526 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000552 | 3 retrocopies |