RetrogeneDB ID: | retro_acar_200 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343742.1:154226..154695(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDCA8 | ||
Ensembl ID: | ENSACAG00000028556 | ||
Aliases: | None | ||
Description: | cell division cycle associated 8 [Source:HGNC Symbol;Acc:14629] |
Percent Identity: | 65.19 % |
Parental protein coverage: | 53.24 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MAPSKK-KRSKAQSK-NSLRDKQIDAFIESFDQEVKRRVEKLRADLKNVQENISTMFDREILRLPTALRE |
MAPSKK.K....Q....S.RDK..DAF...FDQEV..R.E.LRAD.KN.Q.NISTMF..E.LRLPTALRE | |
Retrocopy | MAPSKK>KGQRHQAR*MSFRDKHSDAFLKAFDQEVQSRIE*LRADFKNLQGNISTMFNQEMLRLPTALRE |
Parental | MNWISYCALGEDPAVLEQLALEGTDVQEINEMASKALRTPVRTVRKAAKAKLPIESIEEEEEGPILPLRK |
MNWISY.A.GEDPA.LEQLALE..D.QEI.EMASKALRTPV.TV.KA.KAKLPIESI..E.EGP.L..RK | |
Retrocopy | MNWISY*AFGEDPAALEQLALERADFQEIHEMASKALRTPV*TVWKAVKAKLPIESI-KEVEGPVLHMRK |
Parental | RSRQEDEAPIPLPPEQKP |
RS..........P....P | |
Retrocopy | RSQXXXXXXXXXPTPLSP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 2 .00 RPM |
SRP009831_brain | 0 .00 RPM | 0 .33 RPM |
SRP009831_dewlap | 0 .08 RPM | 10 .59 RPM |
SRP009831_embryo | 0 .03 RPM | 79 .52 RPM |
SRP009831_heart | 0 .00 RPM | 0 .93 RPM |
SRP009831_liver | 0 .00 RPM | 4 .50 RPM |
SRP009831_lung | 0 .00 RPM | 1 .96 RPM |
SRP009831_ovary | 0 .12 RPM | 31 .85 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000028556 | 2 retrocopies |
retro_acar_139, retro_acar_200 ,
|
Choloepus hoffmanni | ENSCHOG00000004959 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002008 | 1 retrocopy | |
Homo sapiens | ENSG00000134690 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000007719 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000011926 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000014340 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000011630 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001526 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000000552 | 3 retrocopies |