RetrogeneDB ID: | retro_acar_174 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343305.1:1329614..1330069(+) | ||
Located in intron of: | ENSACAG00000014122 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GTF2F2 | ||
Ensembl ID: | ENSACAG00000028333 | ||
Aliases: | None | ||
Description: | general transcription factor IIF, polypeptide 2, 30kDa [Source:HGNC Symbol;Acc:4653] |
Percent Identity: | 80.52 % |
Parental protein coverage: | 66.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | ESSNTEKLSLEGIVVQRAECRPAASENYMKLKRLQIEESSKPVSWTMQLEKAVTT-NYKPVANHQYNIEY |
..S..E.LSLEG.V.Q.A.CRPAASEN..KLKRLQ.EESSKPVSW..QL.KAVT..NYKPV.NHQ.NIE. | |
Retrocopy | KESSLEELSLEGRVAQCAGCRPAASENDVKLKRLQMEESSKPVSWIIQLDKAVTK<NYKPVVNHQ*NIEC |
Parental | EKKKKEDGKRARAEKQQVLDMLFSAFEKHQYYNIKDLVDITKQPVSYLKEILREIGIYNVKGTHKNTWEL |
EKKKK.DGKRA.AEKQQVL.MLFSAFEKHQYYNIKDLVDITKQPV..LKEI.REIGIYNVK..HKNTWEL | |
Retrocopy | EKKKK-DGKRAQAEKQQVLGMLFSAFEKHQYYNIKDLVDITKQPVRGLKEI*REIGIYNVKRMHKNTWEL |
Parental | KPEYRHYQGEDKSD |
KPEY.HYQGEDK.D | |
Retrocopy | KPEYQHYQGEDKHD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 18 .51 RPM |
SRP009831_brain | 0 .00 RPM | 43 .74 RPM |
SRP009831_dewlap | 0 .00 RPM | 46 .57 RPM |
SRP009831_embryo | 0 .03 RPM | 39 .30 RPM |
SRP009831_heart | 0 .00 RPM | 15 .88 RPM |
SRP009831_liver | 0 .08 RPM | 13 .70 RPM |
SRP009831_lung | 0 .00 RPM | 16 .98 RPM |
SRP009831_ovary | 0 .00 RPM | 37 .22 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 8 .52 RPM |