RetrogeneDB ID: | retro_acar_181 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343341.1:625974..626807(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000004255 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ATP5B | ||
Ensembl ID: | ENSACAG00000016752 | ||
Aliases: | None | ||
Description: | ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:G1KT22] |
Percent Identity: | 92.17 % |
Parental protein coverage: | 52.46 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MLSFAGRRCVASAASLLRGSGTRPLQDLLQLRSGAVASATEARRNYAAQTAPAAKAGVATGRIVAVIGAV |
MLSFAG.RC..SAASLLRGSGTRPLQDLLQL.SGA.ASAT.A.RNYAAQTAPAAKAGVATG.IVAVIGAV | |
Retrocopy | MLSFAGHRCATSAASLLRGSGTRPLQDLLQLYSGAIASATKACRNYAAQTAPAAKAGVATGCIVAVIGAV |
Parental | VDVQFEEALPPILNALEVQGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQR-VLDLGAPIRIPVGPE |
VDVQF.EALPPILNALEVQG.DT.LVLEVAQHLGENTVRTIAMDGTEGLVRGQR.VLDLGAPI.IPVGPE | |
Retrocopy | VDVQFDEALPPILNALEVQG*DTQLVLEVAQHLGENTVRTIAMDGTEGLVRGQR<VLDLGAPIKIPVGPE |
Parental | TLGRIMNVIGEPIDERGPITTKQFAAIHAEAPAFVEMS-VEQ-EILVTGIKVVDLL-APYAKGGKIGLFG |
TLGRI.NVIGEPIDERGPITTKQFAAIHAEAPAFVEMS..EQ.EI.VTGIKVVDLL.APYAKGGKIGLFG | |
Retrocopy | TLGRIINVIGEPIDERGPITTKQFAAIHAEAPAFVEMS>LEQ>EIPVTGIKVVDLL>APYAKGGKIGLFG |
Parental | GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPP |
GAGVGKTVLIMELINNVAKAHGGYSVFAGVG.RTREGNDLYHEMIESGVINLKDATSKV.LV.GQMNEPP | |
Retrocopy | GAGVGKTVLIMELINNVAKAHGGYSVFAGVGKRTREGNDLYHEMIESGVINLKDATSKVVLVHGQMNEPP |
Parental | G |
G | |
Retrocopy | G |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .10 RPM | 227 .69 RPM |
SRP009831_brain | 0 .05 RPM | 361 .06 RPM |
SRP009831_dewlap | 0 .00 RPM | 241 .22 RPM |
SRP009831_embryo | 0 .18 RPM | 673 .03 RPM |
SRP009831_heart | 0 .26 RPM | 1817 .54 RPM |
SRP009831_liver | 0 .00 RPM | 275 .27 RPM |
SRP009831_lung | 0 .00 RPM | 139 .03 RPM |
SRP009831_ovary | 0 .04 RPM | 245 .32 RPM |
SRP009831_skeletal_muscle | 0 .04 RPM | 522 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016752 | 1 retrocopy |
retro_acar_181 ,
|
Bos taurus | ENSBTAG00000013315 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000005350 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033571 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000011289 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010208 | 1 retrocopy | |
Homo sapiens | ENSG00000110955 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000011596 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002875 | 6 retrocopies | |
Microcebus murinus | ENSMICG00000001084 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000001027 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000004668 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000005107 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000405 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000009962 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002144 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004025 | 2 retrocopies |