RetrogeneDB ID: | retro_acar_185 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343389.1:554801..555354(-) | ||
Located in intron of: | ENSACAG00000005252 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNB2L1 | ||
Ensembl ID: | ENSACAG00000012008 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.89 % |
Parental protein coverage: | 58.99 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT |
N.Q.VSGS.DK.IKLWNTLGVC.YTVQ.E.HSE.VSCV.FS.N.SNPIIVSCGW.KLVKVWNLANC..K. | |
Retrocopy | NHQNVSGSWDKIIKLWNTLGVCMYTVQQERHSE*VSCVHFSLNRSNPIIVSCGWNKLVKVWNLANC--KL |
Parental | N-HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA-LCFSPNRYWLCAATGP |
N.H.......NT.TVSPDGSLCASG.K..QAM.WDLNEGKHLYTLDGGDIINA.LCFSPN.YWLCAATGP | |
Retrocopy | N<HXXXXXXXNTMTVSPDGSLCASGDKVNQAMRWDLNEGKHLYTLDGGDIINA<LCFSPNHYWLCAATGP |
Parental | SIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT |
SIKIW.L.G.IIVDELKQEVISTSSKAEPPQCT.L..SAD.QTLFAG.T | |
Retrocopy | SIKIWVLQGMIIVDELKQEVISTSSKAEPPQCTPLV*SADRQTLFAG*T |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .07 RPM | 762 .59 RPM |
SRP009831_brain | 0 .24 RPM | 118 .40 RPM |
SRP009831_dewlap | 0 .00 RPM | 328 .17 RPM |
SRP009831_embryo | 0 .00 RPM | 1099 .61 RPM |
SRP009831_heart | 0 .05 RPM | 471 .92 RPM |
SRP009831_liver | 0 .00 RPM | 760 .25 RPM |
SRP009831_lung | 0 .00 RPM | 564 .28 RPM |
SRP009831_ovary | 0 .00 RPM | 224 .58 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 330 .24 RPM |