RetrogeneDB ID: | retro_mmul_1956 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 5:85791999..85792457(-) | ||
Located in intron of: | ENSMMUG00000002366 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNB2L1 | ||
Ensembl ID: | ENSMMUG00000003604 | ||
Aliases: | None | ||
Description: | guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1 [Source:HGNC Symbol;Acc:4399] |
Percent Identity: | 64.97 % |
Parental protein coverage: | 51.66 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVS-CGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP |
TL....Y..Q.ESHSEWVS...FSPNS....I.S.C..DKLVKVWN.ANC.LK.NH.GHTG.LNTVTVSP | |
Retrocopy | TLSIYTYINQVESHSEWVSYIHFSPNSNT--IIS<CS*DKLVKVWNPANCELKMNHVGHTGHLNTVTVSP |
Parental | DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQ |
D..LCASGG.....M.WDLN.GKH...L.G..IINALC..PN.YW..A.TG..IKIWDLEGKII..E..Q | |
Retrocopy | DEPLCASGGNADHNMPWDLNTGKHHDMLCGEKIINALCLTPNYYWF*ATTGLGIKIWDLEGKIII-EMQQ |
Parental | EVISTSSKAEPPQCTSL |
EVI...SK.EPP.CTSL | |
Retrocopy | EVIRICSKVEPPHCTSL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 88 .30 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 141 .92 RPM |
SRP007412_cerebellum | 0 .65 RPM | 108 .49 RPM |
SRP007412_heart | 0 .00 RPM | 187 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 264 .20 RPM |
SRP007412_liver | 0 .00 RPM | 462 .34 RPM |
SRP007412_testis | 8 .74 RPM | 142 .90 RPM |