RetrogeneDB ID: | retro_acar_187 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | GL343406.1:701111..701633(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TMED10 | ||
Ensembl ID: | ENSACAG00000016899 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.14 % |
Parental protein coverage: | 81.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | IHRDTLVTGEYEVASPPGSPSGPSANLKITDSSGHILYSKEDAIKGKFAFTTEDYDMFEACFESKLPVGT |
IHRDTLVTGEY.VAS.PGS.SGPS.NLKITDS.GHILYSKEDAIK.KFAFTTEDYDMFEACFESKLPVGT | |
Retrocopy | IHRDTLVTGEYKVASLPGSSSGPSVNLKITDSFGHILYSKEDAIKDKFAFTTEDYDMFEACFESKLPVGT |
Parental | GRMPDQLVTLTMKHGVEAKNYEEIAKVEKLKPLELELRRLEDLSESIVNDFAYMKKREEEMRDTNESTNI |
G.MPDQ.VTLTMKHGVEAKN..EI.KVEKLKPLELEL.RLED.SESIVNDF.YMKK.EEEM.DT.ESTNI | |
Retrocopy | GQMPDQPVTLTMKHGVEAKNHKEINKVEKLKPLELELQRLEDISESIVNDFSYMKKQEEEM*DT-ESTNI |
Parental | RVLYFSIFSMFCLIGLATWQVFYLRHFFKAKKLIE |
RVLYF.IFSMFCLIG.ATWQVFYLRHFFKAKKLIE | |
Retrocopy | RVLYFRIFSMFCLIGRATWQVFYLRHFFKAKKLIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 1 .61 RPM | 237 .93 RPM |
SRP009831_brain | 0 .00 RPM | 51 .08 RPM |
SRP009831_dewlap | 0 .00 RPM | 83 .87 RPM |
SRP009831_embryo | 0 .30 RPM | 130 .85 RPM |
SRP009831_heart | 0 .00 RPM | 96 .24 RPM |
SRP009831_liver | 0 .04 RPM | 107 .57 RPM |
SRP009831_lung | 0 .00 RPM | 100 .59 RPM |
SRP009831_ovary | 0 .04 RPM | 96 .56 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 129 .41 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000016899 | 1 retrocopy |
retro_acar_187 ,
|
Callithrix jacchus | ENSCJAG00000020627 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000019851 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000010607 | 1 retrocopy | |
Homo sapiens | ENSG00000170348 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000007453 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000017125 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000015168 | 2 retrocopies | |
Mus musculus | ENSMUSG00000021248 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000016453 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000004669 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000029389 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006552 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007901 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000007392 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003089 | 1 retrocopy |