>retro_acar_28
TGTGGAAAGAGCTTTAGTCAGCATGGAAAGCTGAAGAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCT
GGAGTGTGGACAGAGCTTCACTCATAGTTCAGGTCTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTTTAAAT
GCCTGGAGTGTGAACAGAGCTTCACTCGGAGTTCAGGTCTACGTTCGCATCAAAGGACTCACACTGGGGAGAAACCCTAT
AAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAGGTCTACGTAGACATCAAAGGACTCACACTGGGGAGAAACC
CTTTAAATGCCTGGAGTGTGGACAGAGCTTCACTCGGAGTTCAGGTCTACGTTCACATCAAAGGACTCACACTGGGGAGA
AACCCTTTAAATGCCTGGAGTGTGAACAGAGCTTCACTCGGAGTTCAGGTCTACGTTCGCATCAAAGGACTCACACTGGG
GAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGTTCAGGTCTACGTAGACATCAAAGGACTCACAC
TGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTTGCTCGTAGTTCAGGCCTACATTCACATCAAAGGATTC
ACACTGGGGAGAAACCCTTTAAATGCCTGGAGTGTGGACAGAGCTTCACTCATAGCTCAGGCCTACGTAGACATCAAAGG
ACTCACACTGGGGAGAAACCCTTTAAATGCCTGGAGCGTGAACAGAGCTTCATTCAGAGTTCAGTTCTACGTAGACATCA
AAGGACTCACACTAGGGAGAAACCCTTTAAATGCCTGGAGTGTGGACAGAGCTTCACTCGTAGCTCAGGCCTACGTAGAC
ATCAAAGGACTCACACTGGGGAGAAACCCTATAACTGCCTGGAGTGTGGACAGAGCTTTGCTTGTAATGGAAGTCTACAT
TTACATCAAAGGACTCACACTGGGGAGAAACCCTTTAAATGCCTGGAGTGTGGACAGAGCTTCACTCAAAGCTCAGGCCT
ACGTAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAAGGCTTTGCTGATAGTTCAG
GCCTACATTCACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCATGTATAGT
TCACATCTACGTAGACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCACTCG
TAGTTCAGGTTTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAGAGCTTCA
CTCATAGTTCAGGCTTACGTAGACATCAAAGGACTCACACTGGGGAGAAACCCTATACATGCCTGGAGTGTGGACAGAGC
TTCACTCGTAGTTCAAGCCTACGTTCCCATCAAAGGACTCACACTGGGGAGAAACCTTATAAATGCCTGGAGTGTGGACA
GAGCTTCACTCGTAGTTCAGGCCTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTATACATGC
ORF - retro_acar_28 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
82.64 % |
Parental protein coverage: |
58.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | CEQSFTQSSGLHSHQRTHTGEKPFKCLECGQSFAHNGSLHSHQRTHTGEKPYKCVECGQSFTQNSGLRTH |
| C..SF.Q...L..HQRTHTGEKP..CLECGQSF.H...L.SHQRTHTGEKP.KC.EC.QSFT..SGLR.H |
Retrocopy | CGKSFSQHGKLKRHQRTHTGEKPYNCLECGQSFTHSSGLRSHQRTHTGEKPFKCLECEQSFTRSSGLRSH |
|
Parental | QRTHTGEKPYNCLQCGQSFTHRSGLRRHQRIHTGEKPYTCLECGQSFSRSSGLRSHQRTHTGEKPFKCLE |
| QRTHTGEKPY.CL.CGQSFTH.SGLRRHQR.HTGEKP..CLECGQSF.RSSGLRSHQRTHTGEKPFKCLE |
Retrocopy | QRTHTGEKPYKCLECGQSFTHSSGLRRHQRTHTGEKPFKCLECGQSFTRSSGLRSHQRTHTGEKPFKCLE |
|
Parental | CEQSFTHRSGLRRHQRIHTGEKPYTCLECGQSFTHSSGLRSHQRIHTGEKQYKCLECGQSFTHSSGLRSH |
| CEQSFT..SGLR.HQR.HTGEKPY.CLECGQSFTHSSGLR.HQR.HTGEK.YKCLECGQSF..SSGL.SH |
Retrocopy | CEQSFTRSSGLRSHQRTHTGEKPYKCLECGQSFTHSSGLRRHQRTHTGEKPYKCLECGQSFARSSGLHSH |
|
Parental | QRTHTGEKQYKCLECGQSFTHSSGLRSHQRTHTGEKPYKCLECGQSFAQSGTLHSHQRSHTGEKPYKCLE |
| QR.HTGEK..KCLECGQSFTHSSGLR.HQRTHTGEKP.KCLE..QSF.QS..L..HQR.HT.EKP.KCLE |
Retrocopy | QRIHTGEKPFKCLECGQSFTHSSGLRRHQRTHTGEKPFKCLEREQSFIQSSVLRRHQRTHTREKPFKCLE |
|
Parental | CGQSFTHSSGLRRHQRTHTGEKPYKCLECVFVFGYNSGLRTHQRTHTGEKPFECLECGQSFTHSSGLRSH |
| CGQSFT.SSGLRRHQRTHTGEKPY.CLEC...F..N..L..HQRTHTGEKPF.CLECGQSFT.SSGLR.H |
Retrocopy | CGQSFTRSSGLRRHQRTHTGEKPYNCLECGQSFACNGSLHLHQRTHTGEKPFKCLECGQSFTQSSGLRRH |
|
Parental | QRTHTGEKPYKCLECGQSFTHSSVLRSHQRTHTGEKPYKCLECGQSFTQKGHLHSHQRTHTGEKPYKCLE |
| QRTHTGEKPYKCLECGQ.F..SS.L.SHQRTHTGEKPYKCLECGQSF....HL..HQRTHTGEKPYKCLE |
Retrocopy | QRTHTGEKPYKCLECGQGFADSSGLHSHQRTHTGEKPYKCLECGQSFMYSSHLRRHQRTHTGEKPYKCLE |
|
Parental | CGQSFTQNSGLRTHQRTHTGEEPYTCLECGQSFTQNSGLCRHQRTHTGEKPYKCLECGQSLTRSSGLRSH |
| CGQSFT..SGLR.HQRTHTGE.PY.CLECGQSFT..SGL.RHQRTHTGEKPY.CLECGQS.TRSS.LRSH |
Retrocopy | CGQSFTRSSGLRSHQRTHTGEKPYKCLECGQSFTHSSGLRRHQRTHTGEKPYTCLECGQSFTRSSSLRSH |
|
Parental | QRTHTGEKPYKCLECGQSFTRGSGLRSHQRTHTGEKPYKC |
| QRTHTGEKPYKCLECGQSFTR.SGLRSHQRTHTGEKPY.C |
Retrocopy | QRTHTGEKPYKCLECGQSFTRSSGLRSHQRTHTGEKPYTC |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
0 .13 RPM |
5 .19 RPM |
SRP009831_brain |
0 .71 RPM |
3 .69 RPM |
SRP009831_dewlap |
0 .38 RPM |
12 .07 RPM |
SRP009831_embryo |
2 .10 RPM |
5 .63 RPM |
SRP009831_heart |
0 .42 RPM |
5 .03 RPM |
SRP009831_liver |
0 .00 RPM |
1 .06 RPM |
SRP009831_lung |
0 .00 RPM |
2 .62 RPM |
SRP009831_ovary |
0 .42 RPM |
14 .13 RPM |
SRP009831_skeletal_muscle |
0 .00 RPM |
0 .76 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_28 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_28 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.