>retro_acar_50
ATGAAGGAGAAAGCGTATAAATGCCTGGAGTGTGGAAAGAGTTTCACGCAGAGGGGTCATCTGTGGCAACATGACAAGAT
TCACACTGGGAAGAAGCCCTATAAATGCCTGGAGTGTGGACAGAGTTTCACTCGGAGTGGAAGTCTACGTACACATCAAA
GGACTCACACTGGGGAAAAACCCTACACATGCCTGGAGTGTGGAAGAAGCTTCAGTCATAGTTCAGGTCTGTGTAGACAT
CAAAAGACTCACACTGGGGAGAGACCTTATGAATGCCTGGAGTGTGGGCAGAGCTTCACTCGGAGTGACATTCTACATTC
ACATCAAAGGATTCACACTGGGGAGAAACCTTATACATGCCCCGAATGCGGTCAGAACTTCACTAAGAATTCGGATCTAT
ATAGTCATCAGAAGACTCACACTGGGGAGAAACCCTACACATGCCTGGAGTGTGGAAGAAGCTTCCGTCATAGTTCAAAT
CTGTATTCACATCAAAGGACTCACACTGGGGAGAAGCCCTATGAATGCCTGGAGTGTGGACAGAGCTTCACTCAGAGTGG
ACATCTACGTGTACATCAAAGGACTCACACTGGGGAGAAACCTTATACATGCCTGGAGTGTGGACAGAAGTTCACTGAGA
GTTCAGCTATACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTACAAATGCCTGGAGTGTGGAAAAAGCTTCACT
ACCAATTCAGGTCTACGTTCACATCAGAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTGTGGACAAAGCTT
CACTCAGATTGAAACTCTACGTTCACATCAAAGGACTCACACTGGGGAGAAGCCCTATGAATGCCTGGAGTGTGGACAGA
GCTTCACTCAGAGTGGACATCTACGTATACATCAAAGGACTCACACTGGGGAGAAACCCTACAAATGCCTGGAGTGTGGA
AAAAGCTTCACTACCAATTCAGGTCTACATTCACATCAGAGGACTCACACTGGGGAGAAACCCTATAAATGCCTGGAGTG
CGGACAAAGCTTCGCTCATAATCAGCGTCTACGTTCACATCAGAGGACTCACAGTGGGGAGAAACCTTATGAATGCCATG
AATGTGGACAGAGCTACTCTCGGATTGAAAGTCTACGTTCACATCAAAGCACTCACACTGGGAAGAAACCCTATAAATGC
CTGGAGTGTGGAAAAAGCTTCGCTCAGAGTTCACATCTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCCTACAA
ATGCCTGGAGTGTGGAAAAAGCTTCGCTCATAGTTCACGTCTACGTTCACATCAAAGGACTCACACTGGGGAGAAACCTT
ATAAATGCCTGGAGTGTGAACAGAGCTTCACTCGGCTTGAAAGTCTACATTCACATCAGAGGACTCACACTGGGGAGAAA
CCCTATGAA
ORF - retro_acar_50 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
75.88 % |
Parental protein coverage: |
53.5 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | EKPYKCLECGQSFSHNSHLHRHQRTHTGEKPYICLECGQSFARSSSLRSHQRTHTGEKPYKCLECGQSFA |
| EK.YKCLECG.SF....HL..H...HTG.KPY.CLECGQSF.RS.SLR.HQRTHTGEKPY.CLECG.SF. |
Retrocopy | EKAYKCLECGKSFTQRGHLWQHDKIHTGKKPYKCLECGQSFTRSGSLRTHQRTHTGEKPYTCLECGRSFS |
|
Parental | HSSALHRHQRTHTGEKTYHCLECGQSFAHSSALHRHQRTHTGEKPYHCLECGQSFTDRSGLRSHQRTHTG |
| HSS.L.RHQ.THTGE..Y.CLECGQSF..S..LH.HQR.HTGEKPY.C.ECGQ.FT..S.L.SHQ.THTG |
Retrocopy | HSSGLCRHQKTHTGERPYECLECGQSFTRSDILHSHQRIHTGEKPYTCPECGQNFTKNSDLYSHQKTHTG |
|
Parental | EKPYICLECGQSFARSSGLRSHQRTHTGEKPYECLECGQSFTHNSGLRSHQRTHTGEKPYKCLECGQSFS |
| EKPY.CLECG.SF..SS.L.SHQRTHTGEKPYECLECGQSFT....LR.HQRTHTGEKPY.CLECGQ.F. |
Retrocopy | EKPYTCLECGRSFRHSSNLYSHQRTHTGEKPYECLECGQSFTQSGHLRVHQRTHTGEKPYTCLECGQKFT |
|
Parental | RSSVLRSHERTHTGEKPYECLECGQSFSDCSTLRKHQRIHTGEKPYKCVECGQSFTRKGRLRSHQRTHTG |
| .SS..RSH.RTHTGEKPY.CLECG.SF...S.LR.HQR.HTGEKPYKC.ECGQSFT....LRSHQRTHTG |
Retrocopy | ESSAIRSHQRTHTGEKPYKCLECGKSFTTNSGLRSHQRTHTGEKPYKCLECGQSFTQIETLRSHQRTHTG |
|
Parental | EKPYKCLECGQSFTQSSGLRIHQRTHTGEKPYKCLECGQTFTHNSGLRSHQRTHTGEKPYNCLECGQSFT |
| EKPY.CLECGQSFTQS..LRIHQRTHTGEKPYKCLECG..FT.NSGL.SHQRTHTGEKPY.CLECGQSF. |
Retrocopy | EKPYECLECGQSFTQSGHLRIHQRTHTGEKPYKCLECGKSFTTNSGLHSHQRTHTGEKPYKCLECGQSFA |
|
Parental | HNSDLRSHQRTHTGEKPYKCLECGQSFTRNSGLRSHHRTHTGEKPYECLECGQSFSDCSTLRKHQRTHTG |
| HN..LRSHQRTH.GEKPY.C.ECGQS..R...LRSH..THTG.KPY.CLECG.SF...S.LR.HQRTHTG |
Retrocopy | HNQRLRSHQRTHSGEKPYECHECGQSYSRIESLRSHQSTHTGKKPYKCLECGKSFAQSSHLRSHQRTHTG |
|
Parental | EKPYKCVECGQSFTRKGHLHSHQRTHTGEKPYDCLECGQSFAQSSTLHIHQRTHTGEKPYK |
| EKPYKC.ECG.SF.....L.SHQRTHTGEKPY.CLEC.QSF.....LH.HQRTHTGEKPY. |
Retrocopy | EKPYKCLECGKSFAHSSRLRSHQRTHTGEKPYKCLECEQSFTRLESLHSHQRTHTGEKPYE |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP009831_adrenal |
16 .51 RPM |
23 .14 RPM |
SRP009831_brain |
8 .33 RPM |
5 .92 RPM |
SRP009831_dewlap |
1 .01 RPM |
6 .58 RPM |
SRP009831_embryo |
11 .20 RPM |
9 .60 RPM |
SRP009831_heart |
7 .94 RPM |
12 .87 RPM |
SRP009831_liver |
4 .46 RPM |
4 .62 RPM |
SRP009831_lung |
7 .00 RPM |
10 .88 RPM |
SRP009831_ovary |
0 .27 RPM |
18 .34 RPM |
SRP009831_skeletal_muscle |
1 .68 RPM |
1 .82 RPM |
Anolis carolinensis was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_acar_50 retrocopy.
Anolis carolinensis was not studied using FANTOM5 data.
retro_acar_50 was not experimentally validated.
Retrocopy orthology:
Anolis carolinensis does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.