RetrogeneDB ID: | retro_acar_40 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | AAWZ02037698:641..1379(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSACAG00000002258 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNAI3 | ||
Ensembl ID: | ENSACAG00000010970 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.37 % |
Parental protein coverage: | 68.36 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGCTLSAEDKAAVERSRMIDRNLREDGEKAAKEVKLLLLGAGESGKSTIVKQMKIIHEDGYSEEECKQYK |
MGC..S.E.K.A..RSR.IDR.LR........E.KLLLLG...SGKSTIVKQMKIIH..G...E.CK.YK | |
Retrocopy | MGCRQSSEEKEAARRSRRIDRHLRSESQRQRREIKLLLLGTSNSGKSTIVKQMKIIHSGGFNLEACKEYK |
Parental | VVVYSNTIQSIIAIIRAMGRLKIDFGEVARADDARQLFVLAGSAE-EGVMTPELAGVIKRLWRDPGVQAC |
.....N.I.S...IIRA...LKI.F....RA.DA.QLF.L.G.AE..G..TPEL.GV..RLW.DPGVQ.C | |
Retrocopy | PLIIYNAIDSLTRIIRALATLKIEFHNPDRAYDAVQLFALTGPAESKGEITPELLGVMRRLWGDPGVQEC |
Parental | FSRSREYQLNDSASYYLNDLERISQQNYIPTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERK |
F.RS.EY.L.D.A.YYLNDLERI....YIPT..D.LR.R..TTGIVE..FTFK.L.FKM.DVGGQRSERK | |
Retrocopy | FCRSSEYHLEDNAAYYLNDLERIAAADYIPTVEDILRSRDMTTGIVENKFTFKELTFKMVDVGGQRSERK |
Parental | KWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNR |
KWIHCFEGVTAIIFCV.LS.YDL.L.ED....R | |
Retrocopy | KWIHCFEGVTAIIFCVELSGYDLKLYEDNQTVR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .72 RPM | 97 .42 RPM |
SRP009831_brain | 5 .49 RPM | 100 .17 RPM |
SRP009831_dewlap | 0 .63 RPM | 140 .02 RPM |
SRP009831_embryo | 2 .05 RPM | 168 .73 RPM |
SRP009831_heart | 1 .14 RPM | 37 .04 RPM |
SRP009831_liver | 0 .53 RPM | 81 .64 RPM |
SRP009831_lung | 1 .71 RPM | 145 .68 RPM |
SRP009831_ovary | 1 .00 RPM | 114 .20 RPM |
SRP009831_skeletal_muscle | 0 .18 RPM | 6 .88 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010970 | 1 retrocopy |
retro_acar_40 ,
|
Choloepus hoffmanni | ENSCHOG00000012718 | 1 retrocopy | |
Ciona intestinalis | ENSCING00000005305 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000001800 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015771 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000556 | 1 retrocopy |