RetrogeneDB ID: | retro_chof_359 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | GeneScaffold_951:80281..80804(+) | ||
Located in intron of: | ENSCHOG00000004072 | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000004089 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GNAI3 | ||
Ensembl ID: | ENSCHOG00000012718 | ||
Aliases: | None | ||
Description: | guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3 [Source:HGNC Symbol;Acc:4387] |
Percent Identity: | 75.27 % |
Parental protein coverage: | 50.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | EVKLLLLGAGESGKSTIVKQM-KIIHEDGYSEEECKQYKVV-VYSNTIQSII-AIIRAMGRLKIDFGEAA |
EV.LLL..AG.S...T.V.QM...IHEDGYSEEE..QYKVV..YSNTI.S.I..I.RAMGRLKIDFGEA. | |
Retrocopy | EVRLLLFVAGDSVRFTFVNQM<EFIHEDGYSEEERDQYKVV<FYSNTIESSI<LILRAMGRLKIDFGEAS |
Parental | RADDARQLFVLAGSAEEGV-MTPELAGVIKRLWRDGGVQACFSRSREYQLNDSASYYLNDLDRISQINYI |
.ADDARQLFVLAGSAE.GV..TPE.A....RLW.DGG.QACFSRSR.YQLND.ASYYLNDLDRISQINY. | |
Retrocopy | GADDARQLFVLAGSAEDGV>LTPEQA---ERLWQDGGEQACFSRSRGYQLNDAASYYLNDLDRISQINYV |
Parental | PTQQDVLRTRVKTTGIVETHFTFKDLYFKMFDVGGQRSERKK |
.TQ.DVL..RVKTTG.VE.HFTF.DLYFKMFDV.GQRSER.K | |
Retrocopy | ATQRDVLQARVKTTGLVEMHFTFEDLYFKMFDVDGQRSEREK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000010970 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003770 | 4 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000012718 | 1 retrocopy |
retro_chof_359 ,
|
Ciona intestinalis | ENSCING00000005305 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000001800 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000013587 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000015771 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000556 | 1 retrocopy |