RetrogeneDB ID: | retro_acar_93 | ||
Retrocopylocation | Organism: | Anole lizard (Anolis carolinensis) | |
Coordinates: | 2:90652639..90652892(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | YPEL1 | ||
Ensembl ID: | ENSACAG00000001397 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.74 % |
Parental protein coverage: | 71.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MVKMTKSKTFQAYLPNCHRTYSCIHCRAHLANHDELISKSFQGSQGRAYLFNSVVNVGCGPAEER-VLLT |
MV.MTKS..F.AYLPNCHR.YS.IHC..HLANHDELI.KSFQGSQG.AYLF.SVVN..CGPAEE...L.. | |
Retrocopy | MVNMTKSEMFRAYLPNCHRIYSYIHCGVHLANHDELIFKSFQGSQGPAYLFTSVVNERCGPAEES>ILM- |
Parental | GLHAVADIYCENCKTT |
G.H.VADIYCENCKTT | |
Retrocopy | GFHTVADIYCENCKTT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP009831_adrenal | 0 .00 RPM | 0 .56 RPM |
SRP009831_brain | 0 .00 RPM | 8 .24 RPM |
SRP009831_dewlap | 0 .00 RPM | 2 .83 RPM |
SRP009831_embryo | 0 .00 RPM | 3 .32 RPM |
SRP009831_heart | 0 .00 RPM | 1 .76 RPM |
SRP009831_liver | 0 .00 RPM | 0 .33 RPM |
SRP009831_lung | 0 .00 RPM | 3 .02 RPM |
SRP009831_ovary | 0 .00 RPM | 6 .02 RPM |
SRP009831_skeletal_muscle | 0 .00 RPM | 0 .91 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000001397 | 1 retrocopy |
retro_acar_93 ,
|
Callithrix jacchus | ENSCJAG00000015755 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000024482 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008187 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013638 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000016725 | 1 retrocopy |