RetrogeneDB ID: | retro_amel_1074 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192883.1:21441..21751(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CMPK1 | ||
Ensembl ID: | ENSAMEG00000000012 | ||
Aliases: | None | ||
Description: | cytidine monophosphate (UMP-CMP) kinase 1, cytosolic [Source:HGNC Symbol;Acc:18170] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 61.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | DGFL-RNKDNLQGWKKTMDGKADVSFVLFFDCNNEICIE-RCLERGKSS-GRSDDNRESLEKRIQTYLQS |
DGF..RN.DNLQGWKKTMD.KA.VS.VLFFDCNNEI....RCLERGKSS.GRSDDNRE.LE.RIQTY.QS | |
Retrocopy | DGFQ<RNQDNLQGWKKTMDRKAGVSLVLFFDCNNEILLD<RCLERGKSS>GRSDDNRERLENRIQTYFQS |
Parental | TKPIIDLYEEMGK-VKKIDASKSVDEVFDEVVKIFDKEG |
T.PII......GK.VKKI.AS.SV..V.DEVVK..DKEG | |
Retrocopy | TEPIIAM-KKWGK<VKKIEASESVGQVSDEVVKTSDKEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000000012 | 2 retrocopies |
retro_amel_1074 , retro_amel_1711,
|
Choloepus hoffmanni | ENSCHOG00000004014 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000021250 | 2 retrocopies | |
Felis catus | ENSFCAG00000025426 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000017375 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000026904 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000001380 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009745 | 2 retrocopies | |
Sus scrofa | ENSSSCG00000003885 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017494 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000007511 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004127 | 2 retrocopies |