RetrogeneDB ID: | retro_amel_1090 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192896.1:1001502..1001972(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BCL7C | ||
Ensembl ID: | ENSAMEG00000007604 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.25 % |
Parental protein coverage: | 73.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | IFKWVPVVDPQEEERRRAGGGAERSRGRERRGR-GASPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEP |
.FKWVPV.D.QEEE..R..G..ERSRG.E.RGR.G.SP.GGG.LILLDLNDEN.N.SFH.E.SLQK...P | |
Retrocopy | MFKWVPVADSQEEE*QRGSGRTERSRGLEGRGR<GSSP*GGGLLILLDLNDENRN*SFHLESSLQKCNQP |
Parental | SPGGTPQPSRPVSPAGPPEGVPEDAQPPRLGQERDSGGINAGSTDEPPMLTKEEPVPELLEAEAPEAYPV |
SPGGTP..S.PV.P..P.E......QPPRLGQERDSG...AGS.DE.P.LTKEEPV.E.LEAEAPEAYP. | |
Retrocopy | SPGGTPLASHPVLPMEPLEDISQGSQPPRLGQERDSGLTSAGSSDELPVLTKEEPVLEHLEAEAPEAYPI |
Parental | FEPVPPVPEAAQGDTEDS |
FEPVPPV.E.AQ.DTEDS | |
Retrocopy | FEPVPPVLETAQVDTEDS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007604 | 2 retrocopies |
retro_amel_1090 , retro_amel_1613,
|
Bos taurus | ENSBTAG00000008412 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016715 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001676 | 1 retrocopy | |
Equus caballus | ENSECAG00000000482 | 1 retrocopy | |
Felis catus | ENSFCAG00000029090 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003225 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000011988 | 1 retrocopy |