RetrogeneDB ID: | retro_amel_1126 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192927.1:332280..332782(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAMEG00000014773 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000017491 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 88.69 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAAPLCCWVLRPRVLSWSRELPCSWRALHTSAVCAKNRAARVRVGKGDKLVTYEEAHVPHYIAHRKGWLS |
MAAP.CC..L..RVLSWS.EL.CSW..LHTSAVCAKNRAARVRVGKGDKLVTYEEAHVPHYIAHRKGWLS | |
Retrocopy | MAAPVCCQGLGSRVLSWSQELLCSWCTLHTSAVCAKNRAARVRVGKGDKLVTYEEAHVPHYIAHRKGWLS |
Parental | LHTGNLDGEDHAAERTVEDVFLQKFMLGTFPGCLADQLILKRRANQLEICALVLRQLPAHKFHLLVGYSE |
.HTGNLDGE.HAAE.TVEDVFL.KFMLGTFP.C.ADQLIL.RRANQLEICALVLRQLPAHKFH.LVGYSE | |
Retrocopy | RHTGNLDGENHAAEPTVEDVFLGKFMLGTFPRCPADQLILNRRANQLEICALVLRQLPAHKFHFLVGYSE |
Parental | TLLSHFYKC-PVRLHLQTVPSKVVYKYI |
TLLSHFYKC.PVRLHLQTVPSKVVYK.I | |
Retrocopy | TLLSHFYKC>PVRLHLQTVPSKVVYKCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017491 | 1 retrocopy |
retro_amel_1126 ,
|
Bos taurus | ENSBTAG00000007398 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000003106 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000016853 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000016782 | 1 retrocopy | |
Homo sapiens | ENSG00000062582 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005692 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000011905 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002405 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013889 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000019127 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000015911 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002938 | 1 retrocopy |