RetrogeneDB ID: | retro_amel_1300 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193168.1:12892..13983(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A1 | ||
Ensembl ID: | ENSAMEG00000016753 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
Percent Identity: | 78.55 % |
Parental protein coverage: | 90.39 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 5 |
Parental | SESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT |
SE.LL.GIYA.G.EKPSAIQQ.AILP..K.YDVI.QAQSG.G.TATFA..ILQQIELDLKATQA.VLAP. | |
Retrocopy | SEFLLCGIYACGSEKPSAIQQ*AILPYFKDYDVITQAQSGPG*TATFAMLILQQIELDLKATQAFVLAPN |
Parental | RELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV-QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM |
RELAQQIQ.VVMAL.D.M.AS...C..GTNV.AEV.QKL.MEA.HIIVGTP..VFDMLN.RYL.P.YIKM | |
Retrocopy | RELAQQIQ*VVMALEDCMDAS---CLEGTNVHAEV<QKL*MEALHIIVGTPRHVFDMLNWRYLFPNYIKM |
Parental | FVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVL-EVTKKFMRDPIRILVKKEELTL-EGI |
FV.DEADE.LS.GFKDQIYDIFQKLNSN.QVVLLSAT.PSD.L.EVTKKFMRDPI.ILVKK......EGI | |
Retrocopy | FVVDEADEILSHGFKDQIYDIFQKLNSN-QVVLLSATLPSDNL<EVTKKFMRDPIQILVKKRGADPGEGI |
Parental | RQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGD-MDQKERDVIM |
.Q.YINVE.EEWKLD.LCDLYETLTIT.AVIFINT..KVDWLTEKM...DFT.S.MH.D.MDQ.E.DVIM | |
Retrocopy | CQVYINVE*EEWKLDILCDLYETLTIT*AVIFINT*GKVDWLTEKMYT*DFTMSTMHRD>MDQMEQDVIM |
Parental | REFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNR-ENYIHRIGRGG-RFGRKGVAINMVTEEDKRT |
REF.SGSSRVL.TTD.LAR.I.V.QVSL.INYDLPTNR.ENYIHRIG.GG.R.G.KGVAINMVTEE.KRT | |
Retrocopy | REFCSGSSRVLMTTDWLARVIGVLQVSLIINYDLPTNR<ENYIHRIGHGG>RYGYKGVAINMVTEEEKRT |
Parental | LRDIETFYNTSIEEMPLNVADLI |
L.D.ETFYNT.IEEMPL.VADLI | |
Retrocopy | LQDVETFYNTFIEEMPLSVADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016753 | 1 retrocopy |
retro_amel_1300 ,
|
Callithrix jacchus | ENSCJAG00000015114 | 8 retrocopies | |
Dipodomys ordii | ENSDORG00000014225 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010780 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000014759 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003415 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000013499 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000007090 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000008132 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000008591 | 2 retrocopies | |
Sorex araneus | ENSSARG00000006017 | 7 retrocopies |