Parental gene: | EIF4A1, ENSSARG00000006017 |
| Aliases: | None |
| Description: | eukaryotic translation initiation factor 4A1 [Source:HGNC Symbol;Acc:3282] |
| Organism: | Shrew (Sorex araneus) |
| Coordinates: | GeneScaffold_1637:236978..242377(+) |
>ENSSARG00000006017
ATGTCTGCGAGTCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGTGTCATCGAGAGTAATTG
GAACGAAATTGTTGACAGCTTTGATGACATGAACCTCTCTGAATCCCTCCTCCGTGGCATCTACGCCTACGGTTTTGAGA
AACCCTCTGCCATCCAGCAGCGAGCCATTCTTCCTTGTATCAAGGGTTATGATGTGATCGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACTTTTGCCATATCAATTCTGCAGCAAATTGAACTGGATTTAAAAGCCACCCAGGCCTTGGTGCTGGC
ACCAACTAGAGAGTTGGCGCAGCAGATACAAAAGGTGGTCATGGCATTAGGAGATTACATGGGTGCCTCCTGCCACGCCT
GCATTGGGGGTACCAACGTGCGTGCTGAGGTGCAGAAGCTGCAGATGGAAGCGCCCCACATCATTGTGGGTACCCCAGGC
CGTGTGTTTGACATGCTTAACCGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTGCTGGATGAAGCTGATGAAAT
GTTGAGTCGAGGATTCAAGGATCAGATTTATGATATATTTCAAAAGCTTAATAGCAACACCCAGGTGGTTTTGCTGTCTG
CTACAATGCCTTCTGATGTCCTTGAGGTGACCAAGAAGTTCATGAGGGACCCTATTCGAATTCTGGTCAAGAAAGAAGAG
TTGACTTTGGAGGGTATTCGCCAGTTCTACATCAATGTGGAGCGAGAGGAGTGGAAGCTGGACACACTGTGTGACTTATA
TGAAACCTTGACCATCACCCAAGCAGTCATTTTCATCAACACCCGAAGGAAGGTTGATTGGCTCACCGAGAAGATGCATG
CCCGAGATTTCACCGTGTCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGATGTAATCATGAGGGAATTCCGCTCT
GGTTCCAGTAGAGTATTGATTACCACTGACCTGCTGGCCAGAGGCATCGATGTACAACAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACTAACAGGGAAAACTATATTCACAGAATTGGTCGTGGTGGACGTTTTGGGCGTAAGGGTGTGGCTATCA
ACATGGTGACAGAAGAAGACAAGAGAACTCTTCGAGATATCGAGACCTTCTACAATACCTCCATTGAGGAGATGCCTCTC
AATGTTGCCGACCTCATCTGA
ATGTCTGCGAGTCAGGATTCCCGATCCAGAGACAATGGCCCCGATGGGATGGAGCCCGAAGGTGTCATCGAGAGTAATTG
GAACGAAATTGTTGACAGCTTTGATGACATGAACCTCTCTGAATCCCTCCTCCGTGGCATCTACGCCTACGGTTTTGAGA
AACCCTCTGCCATCCAGCAGCGAGCCATTCTTCCTTGTATCAAGGGTTATGATGTGATCGCTCAAGCCCAATCTGGGACT
GGGAAAACGGCCACTTTTGCCATATCAATTCTGCAGCAAATTGAACTGGATTTAAAAGCCACCCAGGCCTTGGTGCTGGC
ACCAACTAGAGAGTTGGCGCAGCAGATACAAAAGGTGGTCATGGCATTAGGAGATTACATGGGTGCCTCCTGCCACGCCT
GCATTGGGGGTACCAACGTGCGTGCTGAGGTGCAGAAGCTGCAGATGGAAGCGCCCCACATCATTGTGGGTACCCCAGGC
CGTGTGTTTGACATGCTTAACCGGAGATACCTGTCTCCCAAATACATCAAGATGTTTGTGCTGGATGAAGCTGATGAAAT
GTTGAGTCGAGGATTCAAGGATCAGATTTATGATATATTTCAAAAGCTTAATAGCAACACCCAGGTGGTTTTGCTGTCTG
CTACAATGCCTTCTGATGTCCTTGAGGTGACCAAGAAGTTCATGAGGGACCCTATTCGAATTCTGGTCAAGAAAGAAGAG
TTGACTTTGGAGGGTATTCGCCAGTTCTACATCAATGTGGAGCGAGAGGAGTGGAAGCTGGACACACTGTGTGACTTATA
TGAAACCTTGACCATCACCCAAGCAGTCATTTTCATCAACACCCGAAGGAAGGTTGATTGGCTCACCGAGAAGATGCATG
CCCGAGATTTCACCGTGTCTGCCATGCATGGAGATATGGACCAAAAGGAACGAGATGTAATCATGAGGGAATTCCGCTCT
GGTTCCAGTAGAGTATTGATTACCACTGACCTGCTGGCCAGAGGCATCGATGTACAACAGGTTTCTTTAGTCATCAACTA
TGACCTTCCCACTAACAGGGAAAACTATATTCACAGAATTGGTCGTGGTGGACGTTTTGGGCGTAAGGGTGTGGCTATCA
ACATGGTGACAGAAGAAGACAAGAGAACTCTTCGAGATATCGAGACCTTCTACAATACCTCCATTGAGGAGATGCCTCTC
AATGTTGCCGACCTCATCTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016753 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000015114 | possible_ortholog | 8 retrogenes | |
| Cavia porcellus | ENSCPOG00000004900 | ortholog_one2one | 1 retrogene | |
| Dipodomys ordii | ENSDORG00000014225 | possible_ortholog | 1 retrogene | |
| Erinaceus europaeus | ENSEEUG00000003581 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000024897 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000161960 | ortholog_one2one | 10 retrogenes | |
| Gorilla gorilla | ENSGGOG00000024702 | ortholog_one2one | 8 retrogenes | |
| Macropus eugenii | ENSMEUG00000010780 | ortholog_one2many | 2 retrogenes | |
| Microcebus murinus | ENSMICG00000014759 | possible_ortholog | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000003415 | ortholog_one2one | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000013499 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000007090 | ortholog_one2many | 3 retrogenes | |
| Mus musculus | ENSMUSG00000059796 | ortholog_one2one | 7 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000009547 | ortholog_one2one | 7 retrogenes | |
| Otolemur garnettii | ENSOGAG00000008132 | possible_ortholog | 2 retrogenes | |
| Ochotona princeps | ENSOPRG00000008591 | possible_ortholog | 2 retrogenes | |
| Pan troglodytes | ENSPTRG00000008694 | ortholog_one2one | 10 retrogenes | |
| Rattus norvegicus | ENSRNOG00000030628 | ortholog_one2one | 3 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000024814 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_sara_6 | 99.07 | 52.96 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_sara_89 | 68.25 | 93.10 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_sara_224 | 80.89 | 55.17 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_sara_383 | 93.08 | 63.79 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_sara_461 | 73.39 | 53.20 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_sara_567 | 86.03 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_sara_605 | 55.64 | 93.10 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSARG00000006017 retrocopies