RetrogeneDB ID: | retro_amel_1519 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193547.1:388522..389059(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000003497 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.85 % |
Parental protein coverage: | 88.73 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MGAYKYIQELWRKKQSDVMRFLLRVR-CWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRG |
.GAY.YI..LWRKKQSDVM.F.LRV..CWQY.QLSAL.R.PR.T.P.K..RLGYK.K.GYV...I.V..G | |
Retrocopy | VGAYRYIPGLWRKKQSDVMGFILRVH<CWQYCQLSALTRVPRLT*PGKVHRLGYKTKRGYVLHQIHVHHG |
Parental | GRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW-VGEDSTYKFFEVILIDSL |
..K.PVPKGATYGKPVHHGV.QLK.ARSL.SV..E.AG.HC.AL..LNSYW.VGEDSTYK.FEVIL.D.L | |
Retrocopy | DCKCPVPKGATYGKPVHHGV*QLKVARSLPSVV*EGAGHHCLALKALNSYW<VGEDSTYKVFEVILLDPL |
Parental | HKTIKRDPDPKWITKPVHKHREMRGLTSAGRKS-RGLGKGHKFH |
HK..K....P...TKP..K.RE...L.SAG....RGLGKGHKFH | |
Retrocopy | HKDQKKW*HPV-DTKPFLKPREV*DLKSAGPRG<RGLGKGHKFH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |