RetrogeneDB ID: | retro_pabe_3098 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:132782921..132783389(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPPYG00000018028 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL15 | ||
Ensembl ID: | ENSPPYG00000014065 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L15 [Source:UniProtKB/Swiss-Prot;Acc:Q5NVE0] |
Percent Identity: | 81.41 % |
Parental protein coverage: | 76.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALR |
PDKAR.LGYKAKQGY.IYRI.V..GGRK.PVPKGATYGKPVHHGVNQLKFA.SLQS.AEER.G..CGALR | |
Retrocopy | PDKARQLGYKAKQGYIIYRIHVHHGGRKCPVPKGATYGKPVHHGVNQLKFAGSLQSIAEERVGHNCGALR |
Parental | VLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTI |
.LNSYWVGEDSTY.FFEVILIDPF...IRRNPDTQ.ITKPVHK.REM.GLTSAG..S.GLGK..KFHHTI | |
Retrocopy | ILNSYWVGEDSTYNFFEVILIDPFYEVIRRNPDTQSITKPVHKQREMCGLTSAGQRSCGLGKCRKFHHTI |
Parental | GGSRRAAWRRRNTLQL |
.GS..AAWRRR.T.QL | |
Retrocopy | DGSCWAAWRRRDTFQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 280 .66 RPM |
SRP007412_cerebellum | 0 .12 RPM | 291 .84 RPM |
SRP007412_heart | 0 .03 RPM | 125 .17 RPM |
SRP007412_kidney | 0 .00 RPM | 300 .97 RPM |
SRP007412_liver | 0 .00 RPM | 241 .14 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3792 |
Pan troglodytes | retro_ptro_2572 |
Gorilla gorilla | retro_ggor_39 |