RetrogeneDB ID: | retro_amel_516 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192483.1:2319825..2320308(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000003497 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.87 % |
Parental protein coverage: | 78.92 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | RPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGAL |
RP.KA.RLGYK.KQG.VIY..RV.RGG.KRP.PK.AT.GKPV.H.V.QLKFA.S.QS.AEE.A...CGAL | |
Retrocopy | RPNKACRLGYKGKQG*VIYQLRV*RGGHKRPRPKHATRGKPVYHVVDQLKFAQSPQSAAEE*ARHLCGAL |
Parental | RVLNSYWVGEDSTYKFFEVILIDSLHKTIKRDPDPKWITKPVHKHREMRGLTSAGR-KSRGLGKGHKFHH |
.VL.S.WVGEDSTY.FFEVILID..HK.I.R.PD...I.KPVH..REMRG.TSAGR...RG.G....F.H | |
Retrocopy | TVLSSCWVGEDSTYRFFEVILIDPFHKAIRRNPDSR*IPKPVHRRREMRGRTSAGR<RQRGFGRCPRFQH |
Parental | TIGGSRR-AAWRRRNTLQLHRYR |
T.GGSRR..AWRR...LQLH..R | |
Retrocopy | TTGGSRR>GAWRRGSPLQLHGCR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000003497 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000003810 | 23 retrocopies |
retro_cjac_1052, retro_cjac_1270, retro_cjac_1316, retro_cjac_1553, retro_cjac_1578, retro_cjac_1625, retro_cjac_1668, retro_cjac_1741, retro_cjac_2143, retro_cjac_2330, retro_cjac_2518, retro_cjac_2532, retro_cjac_2599, retro_cjac_2821, retro_cjac_2907, retro_cjac_3807, retro_cjac_4185, retro_cjac_506, retro_cjac_585, retro_cjac_712, retro_cjac_734, retro_cjac_783, retro_cjac_890,
|
Equus caballus | ENSECAG00000010157 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004155 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000011995 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014065 | 18 retrocopies | |
Pan troglodytes | ENSPTRG00000014695 | 14 retrocopies | |
Pteropus vampyrus | ENSPVAG00000001771 | 13 retrocopies | |
Tursiops truncatus | ENSTTRG00000007244 | 5 retrocopies | |
Vicugna pacos | ENSVPAG00000008573 | 2 retrocopies |