RetrogeneDB ID: | retro_amel_1859 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL194915.1:17021..17315(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CENPV | ||
Ensembl ID: | ENSAMEG00000004716 | ||
Aliases: | None | ||
Description: | centromere protein V [Source:HGNC Symbol;Acc:29920] |
Percent Identity: | 65.31 % |
Parental protein coverage: | 64.24 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKQNRHFIVPASRFKLLKGAESITTYTFNTHKAQHTFCKRCGVQSFYTPRSNPGGFGIAPHCLDEGTVRS |
KKQ.RHF.VPASRF.LL.GAESI.TY...TH.A.H.FC.RCGVQSF....S.PG..G.APHCLD.GTVRS | |
Retrocopy | KKQHRHFLVPASRFTLLLGAESIVTYRSHTHPALHSFCSRCGVQSFHASVSDPGVYGVAPHCLDAGTVRS |
Parental | VVIEEFNGTDW-EKAMKEHKTIKNMSKE |
VVIEE..G.DW.E.A..E.K.I...S.E | |
Retrocopy | VVIEEVDGGDWGEEAVEEPKAIQSASPE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004716 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000018019 | 2 retrocopies | |
Homo sapiens | ENSG00000166582 | 3 retrocopies | |
Macropus eugenii | ENSMEUG00000002027 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000007166 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000010146 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014726 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000029365 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008810 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000012221 | 2 retrocopies |