RetrogeneDB ID: | retro_apla_8 | ||
Retrocopylocation | Organism: | Duck (Anas platyrhynchos) | |
Coordinates: | KB743700.1:538066..539632(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSAPLG00000011735 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSAPLG00000012197 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 62.88 % |
Parental protein coverage: | 99.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CKEKKYDYYSLPKTSVVIAFYNEAWSTLLRTVHSVLETSPDILLEEVILVDDYSDKEHLKERLENYVAGL |
CK.K.Y.Y..LP.TSVVIAFYNEAWSTLLRT.HSVLETSP..LL.E.ILVDD.SDK..LK..LE.Y...L | |
Retrocopy | CKAKSYNYRKLPTTSVVIAFYNEAWSTLLRTIHSVLETSPSVLLKEIILVDDLSDKVYLKTDLEKYISRL |
Parental | RKVRLIRANKREGLVRARLLGASIAKGDILTFLDCHCECHEGWLEPLLERIAEEESSVVCPVIDVIDWNT |
..VRLIR.NKREGLVRARL.GA..A.GD.LTFLDCHCEC..GWLEPLLERIAE.E..V.CPVID.IDWNT | |
Retrocopy | KRVRLIRTNKREGLVRARLIGATFATGDVLTFLDCHCECVSGWLEPLLERIAENETVVICPVIDTIDWNT |
Parental | FEYLGNAGEPQIGGFDWRLVFTWHTIPEKEQKRRKSKIDVIRSPTMAGGLFSVSKKYFDYLGSYDTGMEV |
FEY.....EP.IGGFDWRL.F.WH..P..E..RRKS..D.IRSPTMAGGLF.VSKKYF.YLG.YDTGM.V | |
Retrocopy | FEYYMQSAEPMIGGFDWRLTFQWHSVPKHERLRRKSDTDPIRSPTMAGGLFAVSKKYFEYLGTYDTGMDV |
Parental | WGGENLEFSFRIWQCGGSLEIHPCSHVGHVFPRQAPYSRSKALANSVRAAEVWMDEYKELYYHRNPHARL |
WGGENLE.SFR.WQCGG.LEIHPCSHVGHVFP..APY.R...L.N..RAAEVWMD.YKE..Y.RNP.AR. | |
Retrocopy | WGGENLELSFRVWQCGGTLEIHPCSHVGHVFPKRAPYARPNFLQNTARAAEVWMDGYKEHFYNRNPPARK |
Parental | EPYGDVTERRLLREKLKCKDFKWFLENVYPELHVPEDRPGFFGMLKNKGMVNFCFDYNPSNEHEVAGHRV |
E.YGD..ER.LLRE.LKC..F.W.L.NV..ELHVPEDRPG..G.....G....C.DY....EH...G... | |
Retrocopy | ENYGDISERKLLRERLKCRSFNWYLKNVFSELHVPEDRPGWHGAIRSAGISSECLDY-VLPEHNPTGAHL |
Parental | ILYPCHGMGQNQFFEYTSRNEIRYNTRQPEACAAVDTGTDYLTMNLCKENTPDIPENQKFVFREDGTLFH |
.L..CHG.G.NQFFEYTS..EIR.N....E.CA.V....DY..M..C......IPE.....F.EDGT..H | |
Retrocopy | SLFGCHGQGGNQFFEYTSNKEIRFNS-VTELCAEVPEQEDYISMRSCPKDGSPIPEIIIWHFKEDGTIYH |
Parental | VQTQKCLQAESNSYNGNPAPVLRPC-TDSEYQKWFFKE |
....KCL.A......G.P....R.C.T....Q.W.F.. | |
Retrocopy | PHSGKCLTAYRTT-EGRPDVEMRTCNTADKNQIWKFEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |