RetrogeneDB ID: | retro_pvam_1347 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_658:289332..290227(-) | ||
Located in intron of: | ENSPVAG00000011562 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSPVAG00000008774 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 58.09 % |
Parental protein coverage: | 51.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | PVIDVIDWNT-EYLGTLGEPHIGD-DWRLVFTWHVVPTRERMRMRSPIDVIRSPTMAGGLFAVSKKYFEY |
PVID.IDWNT.E.....GEP.IG..DWRL.F.WH.VP..ER.R..S.ID.IRSPTMAGGLFAVSKKYFEY | |
Retrocopy | PVIDTIDWNTFEFYMQTGEPMIGGFDWRLTFQWHSVPKHERDRWKSRIDPIRSPTMAGGLFAVSKKYFEY |
Parental | LGSYDTGMEVWGGENLEFSFRIWQCGGTLEIHPCSHVGHVFPKQAPYSRTKALANSVRAAEVWMDEFKEL |
LG.YDTGMEVWGGENLE.SFR.WQCGG.LEIHPCSHVGHVFPK.APY.R...L.N..RAAEVWMDE.KE. | |
Retrocopy | LGTYDTGMEVWGGENLELSFRVWQCGGKLEIHPCSHVGHVFPKRAPYARPNFLQNTARAAEVWMDEYKEH |
Parental | YYHRNPHA-RLEPFGDVTERRQLRAKL-QCKDFKWFLETVYPELHVPEDRPGFFGMLQNKGLKDYCFDYN |
.Y.R.P.A.R....GD..ER..LR..L..CK.F.W.L..V...LHVPEDRPG..G.....G....C.DYN | |
Retrocopy | FYNRSPPA<RKDAYGDISERKLLRERL<DCKSFDWYLKNVFSNLHVPEDRPGWHGAIRSMGISSECLDYN |
Parental | PPNEHDITGHQVHLYLCHGMGQNQFFEYTSQREIRYNTHQPEACIAVEAGTDILIMHLCEE---TAPENQ |
.P.....TG....L..CHG.G.NQFFEYTS..EIR.N....E.C..V........M..C.......P.N. | |
Retrocopy | SP-DNNPTGANLSLFGCHGQGGNQFFEYTSNKEIRFNS-VTELCAEVPEQKNHVGMQNCPKDGFPVPANI |
Parental | KFILQEDGSLFHIQSNKCVQAER |
.....EDG..FH..S..CV.A.R | |
Retrocopy | IWHFKEDGTIFHPHSGLCVSAYR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |