RetrogeneDB ID: | retro_ttru_212 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_1560:118469..119551(-) | ||
Located in intron of: | ENSTTRG00000002513 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GALNT12 | ||
Ensembl ID: | ENSTTRG00000010848 | ||
Aliases: | None | ||
Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877] |
Percent Identity: | 66.67 % |
Parental protein coverage: | 62.52 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SVIITFYNEAWSTLLRTVYSV-LETSPDTLLEEVILVDDYSDREHLKERLASELARLPKVRLIRANKREG |
SVI..FYNEAWSTLLRT..SV.LETSP..LL.E.ILVDD.SDR..LK..L......L..VRLIR.NKREG | |
Retrocopy | SVIVAFYNEAWSTLLRTIHSV<LETSPAVLLKEIILVDDLSDRVYLKTQLETYISNLDRVRLIRTNKREG |
Parental | LVRARLLGASAAKGDVLTFLDCHCECHEGWLEPLLQRIHEEELAVVCPVIDVIDWNTFEYLGNAGEPQIG |
LVRARL.GA..A.GDVLTFLDCHCEC..GWLEPLL.RI...E.A.VCPVID.IDWNTFE.....GEP.IG | |
Retrocopy | LVRARLIGATFATGDVLTFLDCHCECNTGWLEPLLERIAKDETAIVCPVIDTIDWNTFEFYMQTGEPMIG |
Parental | GFDWRLVFTWHVVPERERIRMRSPIDVIRSPTMAGGLFSVSKKYFEYLGSYDTGMEVWGGENLEFSFRIW |
GFDWRL.F.WH.VP..ER.R..S.ID.IRSPTMAGGLF.VSKKYF.YLG.YDTGMEVWGGENLE.SFR.W | |
Retrocopy | GFDWRLTFQWHSVPKHERERRKSRIDPIRSPTMAGGLFAVSKKYFQYLGTYDTGMEVWGGENLELSFRVW |
Parental | QCGGTLETHPCSHVGHVFPRQAPYSRNKALANSVRAAEVWMDEFKELYYHRNPQARLEPFGDVTERRQLR |
QCGG.LE.HPCSHVGHVFP..APY.R...L.N..RAAEVWMD..KE..Y.RNP.AR.E..GD..ER..LR | |
Retrocopy | QCGGKLEIHPCSHVGHVFPKRAPYARPNFLQNTARAAEVWMDGYKEHFYNRNPPARKEAYGDISERKLLR |
Parental | ARLQCKDFKWFLSTVYPELHVPEDRPGFFGMLQNKGLKDYCFDYNPPNEHEITGHQVILYHCHGMGQNQF |
.RL.CK.F.W.L..V...LHVPEDRPG..G.....G....C.DYN.P.....TG....L..CHG.G.NQF | |
Retrocopy | ERLRCKSFDWYLKNVFSNLHVPEDRPGWHGAIRSIGISSECLDYNSPDNNP-TGANLSLFGCHGQGGNQF |
Parental | FEYTSQNEIRYNT |
FEYTS..EIR.N. | |
Retrocopy | FEYTSNKEIRFNS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |