>retro_bole_8
ATGATGGCCAGGACGATTGACTTTGCGCAAGGATGGAGAAGTATGCAGATTGGTATCACTAAGCTGGAAAAGCATGTGGA
AGGACTTCCTGGGCACTCACTTAATAGTGAGCAATATATAAACCTTTACACGACTGTCTACGTTATGTGCACCCAGAAAC
CTCCTCATGATCACGCAGAGAAGCTTTACAACAAGTACCGTGAAGTAGTTGAGGAATATACTAAGTCGACAGTTTTGCCT
GCTCTAAGGAAGACCTATGACGATGAATATATGTTGCTGCGAGTGCTTCTTGAAAGATGTTCTATCCATAAAAAGATGGT
TAGACGCCTATCCAGGATCTTCCACTATGTTGACCGTTACTTCGTTGTTCGCAACTCACTCCTATCTCTAGAAGAAGTTG
GATTAGCATGCTTCGTTGACATGGTTTATAACACGTTGCAACTCAGGGTCAGAGAAGCTGTGATAGCTATAGTTGATAAA
GAACGAGAAGGTGATGATACTGGTATTGATAGGGCGTTACTTGAAAACGTTAAAGACATTTATGTAGAGATTGGAATGGG
TAAGATGAAAAGATACGAACAAGATTTGGAGAGCTTCATGCTTGAAGGTACAGCGTCTTACTATTCTCGCAAGGCATCAA
GATGGATTCAAGAATATTCTTACTTTGATTACATTCGGAAGTCTGAAGAATGTGTAAAGAAGGAGAAGAAGAGAGTGTCT
CACTACCTTTACGCAAGCAGTGAGCCAAAGCTGGTTAAAATAGTAGAGCATGAGTTGTTTGTAGTGTATGCCAACAAGCT
TCTTGAGAAAAAGCACTCAGAGTTCAGGGAAATTGCGGGAGGCTTGGAACCTATAACAAACATATTCAAGCAGCATGTTG
AAGACACAGATGGTCAAGACACGGCTGCAATCAGAAAAGTGATTGAGGTACATGATAAGTACATAGTCTATGTCACAAAG
TGTCTCGAGAATCAAACCATCTTTCACAAGTCCTTGAAAGAGGCATTTAAGTTTTTTTGTAGCAAAGCAGTGTCTGGAAG
CTCTTTAAGTGATGAATCACTGGCAACAATTTGTGACAGAATTATAATTCTCAAGAAATGGGCAAGTGAGGAGCTGAGTG
ATGAAGCTATTGAGAAGGTGGTCAAGTTTCTTGCGTATATAAGTGATGACAAGGATCTTTTTGCAGAGTTTTACAAGAAG
AAGCTGGCACGTAGGCTGCTATTGAATCGTGATGCTAGTGATGATCATGAGAGAGGAATCATTACAAAGCTCAAACAACA
GTTTGGTGGGAATTTTACTTATAAGATGGAGGGAATGGTGACAGATTTGACATTGTCAAGACAAAACCAAAACAGCTTCG
ATGAGTATGTAGCCAATAACCCTGCTGCAAAACCAGGGATTGATTTGAGCGTCACTCTTCTTACAACTAGTGTTTGGCCA
AGTTACAAAACGTTTGACGTGAATCTACCTAGTGAAATGGTCAAGTGTGTTGAAATTTTCAAAGTGTTTTATGAAACCAA
ACACAAACGTAGGAAACTTACTTGGCTCCACTCACTAGAAACTTGTCACATCAACGGAAAGTTCGATCAAAAGCCCATTG
ATTTGATCGTGTCGACTCACCAGGCTGCTGTGCTTCTGCTTTTTAACACAAGGGACAAACTGAACTACACTGACATCCAA
ACTCAACTGAACCTACGCCATGAAGATCTTGTGTGGGTGCTTCATTCCTTGTCATGTGCTAAATACAAGGTTCTTATCAA
GGAGCCAGCCACAGAGACTGTCTCCAAGACTGATGTTTTTGAAGTCAACTCCAAATTTACCTCTAGAACGGGCGGAGTAA
AGATTCCTCTCTCTCATGTTGATGAACGGAAGAAAGTTGTTGAATATGTTAATAACGACAGGCGCTATGCAATTGAGGCT
TCTATTGTCAGGATCATGAAGGGCAAGAAAGTATTGGGACATGAACAACTTGTTTCTGAATGTGTCAAGCAACTTAGTGG
GATGTTCAAGCCTGATGTTAAAGCGATTAAAACACGTATAGAGGAATTAATAGCAAGAGATTATTTGGAGAGGGACAAGA
TGAATCCTAACATGTTTAGGTACTTGGCTTAG
ORF - retro_bole_8 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
73.35 % |
Parental protein coverage: |
54.88 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | QEQVLIRKVIELHDKYMVYVVECFQNHTLFHKALKEAFEIFCNKTVAGSS-SAELLATFCDNI--LKKGG |
| Q....IRKVIE.HDKY.VYV..C..N.T.FHK.LKEAF..FC.K.V.GSS.S.E.LAT.CD.I..LKK.. |
Retrocopy | QDTAAIRKVIEVHDKYIVYVTKCLENQTIFHKSLKEAFKFFCSKAVSGSSLSDESLATICDRIIILKKWA |
|
Parental | SEKLSDEAIEDTLEKVVKLLAYISD-KDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTS |
| SE.LSDEA.....EKVVK.LAYISD.KDLFAEFY.KKLARRLL..R.A.DDHER.I.TKLKQQ.GG.FT. |
Retrocopy | SEELSDEA----IEKVVKFLAYISDDKDLFAEFYKKKLARRLLLNRDASDDHERGIITKLKQQFGGNFTY |
|
Parental | KMEGMVTDLTLARENQTSFEEYLGNNPAANPGIDLTVTVLTTGFWPSYKSFDINLPSEMVKCVEVFKGFY |
| KMEGMVTDLTL.R.NQ.SF.EY..NNPAA.PGIDL.VT.LTT..WPSYK.FD.NLPSEMVKCVE.FK.FY |
Retrocopy | KMEGMVTDLTLSRQNQNSFDEYVANNPAAKPGIDLSVTLLTTSVWPSYKTFDVNLPSEMVKCVEIFKVFY |
|
Parental | ETKTKHRKLTWIYSLGTCHLNGKFDHKPIELVVSTYQAAVLLLFNTTDKLSYNDILTQLNLSHEDLVRLL |
| ETK.K.RKLTW..SL.TCH.NGKFD.KPI.L.VST.QAAVLLLFNT.DKL.Y.DI.TQLNL.HEDLV..L |
Retrocopy | ETKHKRRKLTWLHSLETCHINGKFDQKPIDLIVSTHQAAVLLLFNTRDKLNYTDIQTQLNLRHEDLVWVL |
|
Parental | HSLSCARYKILTKEPSTKTVSQTDSFEFNAKFTDRMRRIKIPLPPVDERKKVVEDVDKDRRYAIDAAIVR |
| HSLSCA.YK.L.KEP.T.TVS.TD.FE.N.KFT.R....KIPL..VDERKKVVE.V..DRRYAI.A.IVR |
Retrocopy | HSLSCAKYKVLIKEPATETVSKTDVFEVNSKFTSRTGGVKIPLSHVDERKKVVEYVNNDRRYAIEASIVR |
|
Parental | IMKSRKVLGHQQLVSECVEQLSRMFKPDIKAIKKRMEDLITRDYLERDKENPNMFRYLA |
| IMK..KVLGH.QLVSECV.QLS.MFKPD.KAIK.R.E.LI.RDYLERDK.NPNMFRYLA |
Retrocopy | IMKGKKVLGHEQLVSECVKQLSGMFKPDVKAIKTRIEELIARDYLERDKMNPNMFRYLA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Brassica oleracea was not studied using RNA-Seq expression data.
Brassica oleracea was not studied using ChIP-Seq data.
Brassica oleracea was not studied using EST data.
Brassica oleracea was not studied using FANTOM5 data.
retro_bole_8 was not experimentally validated.
Retrocopy orthology:
Brassica oleracea does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
3 retrocopies.