RetrogeneDB ID: | retro_brap_7 | ||
Retrocopylocation | Organism: | Chinese cabbage (Brassica rapa) | |
Coordinates: | A02:22138952..22139951(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Bra032979 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Bra014962 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.87 % |
Parental protein coverage: | 94.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SEEPLLTAQNQRFTMFPIRYKSIWEMYKKAEASFWTAEEVDLSTDVQHWE-KLSDSEKHFISHVLAFFAA |
.EEPLLT....RF.MFPI.Y..IWEMYKKAEASFWTAEEVDLS.D...WE..L.D.E.HFI.HVLAFFAA | |
Retrocopy | AEEPLLTPTPDRFCMFPIHYPQIWEMYKKAEASFWTAEEVDLSQDTRDWETNLNDGERHFIKHVLAFFAA |
Parental | SDGIVLENLAARFLNDVQVPEARAFYGFQIAMENIHSEMYSQLLETFIKDSQEKDRLFNAIETIPCISNK |
SDGIVLENLA.RF..DVQV.EARAFYGFQIA.ENIHSEMYS.LL.T.IKD..E.D.LF.AIETIPC...K | |
Retrocopy | SDGIVLENLASRFMSDVQVSEARAFYGFQIAIENIHSEMYSLLLDTYIKDNKERDHLFRAIETIPCVAKK |
Parental | AKWCLDWIQSPMSFAVRLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLY |
A.W.L.WI.....FA.R.VAFACVEGIFFSGSFC.IFWLKKRGLMPGLTFSNELISRDEGLHCDFACL.Y | |
Retrocopy | AQWALKWIDGSQTFAERIVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLIY |
Parental | SLLQKQLPVEKVYQIVHEAVEIETEFVCKALSCDLIGMNSNLMSQYIQFVADRLLVTLGCERRYKADNPF |
.LL...L..E.V..IV..AVEIE.EFVC.AL.C.L.GMN..LMSQYI.FVADRLL..LG....Y...NPF | |
Retrocopy | TLLRTKLSEERVKSIVCDAVEIEREFVCDALPCALVGMNRDLMSQYIEFVADRLLGALGYGKVYGVANPF |
Parental | DWMEFISLQGKTNFFEKRVGEYQKASVMSSLQEGN--KNYEFKIDEDF |
DWME.ISLQGKTNFFEKRVG.YQKASVMSS........N..F..DEDF | |
Retrocopy | DWMELISLQGKTNFFEKRVGDYQKASVMSSVNGNGAFDNHVFSLDEDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00025p00110680 | 1 retrocopy | |
Brassica rapa | Bra014962 | 1 retrocopy |
retro_brap_7 ,
|
Prunus persica | PRUPE_ppa008063mg | 1 retrocopy | |
Solanum lycopersicum | Solyc01g080210.2 | 1 retrocopy | |
Theobroma cacao | TCM_020494 | 1 retrocopy | |
Vitis vinifera | VIT_05s0020g02560 | 1 retrocopy |