RetrogeneDB ID: | retro_slyc_6 | ||
Retrocopylocation | Organism: | Tomato (Solanum lycopersicum) | |
Coordinates: | 2:54781158..54782148(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Solyc02g094160.1 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Solyc01g080210.2 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.07 % |
Parental protein coverage: | 95.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEPILKEQSQKYCTFPIRYPQLWEMYKKAVASFWSVEEVDLSEDIQHWEALSESEKHFISHVLAFFAASD |
EEP.L.......C.FPI.YPQ.WEMYKKA.ASFW..EEVDLS.D..HWE.L...E.HFI.HVLAFFAASD | |
Retrocopy | EEPLLASNPDRFCMFPIQYPQIWEMYKKAMASFWTAEEVDLSTDTRHWENLTSGERHFITHVLAFFAASD |
Parental | GIVLENLAARFLNDVQIQEARAFYGFQIAMENIHSEMYSLLLDAFIKDPRQKNKLFNAIDSIPCVSQKAK |
GIVLENLA.RF..DVQ..EARAFYGFQIA.ENIHSEMYSLLL...IKD...K.KLF.AI..IPCV..KAK | |
Retrocopy | GIVLENLAGRFMKDVQVAEARAFYGFQIAIENIHSEMYSLLLESYIKDSDEKSKLFRAIETIPCVEKKAK |
Parental | WALNWIQSSSSFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLAYSNVLISKDEGLHRDFACLLYSI |
WAL.WI..S..FAERLVAFACVEGIFFSGSFC.IFWLKKRGLMPGL..SN.LIS.DEGLH.DFACLLYS. | |
Retrocopy | WALRWIDGSETFAERLVAFACVEGIFFSGSFCSIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLLYSL |
Parental | MRNQLTRQKVHQIVHEAVEIETEFVCDALPCALIGMNAELMSQYIKFVADHLLVALGYDKKYNVGNPFDW |
.R..LT...V..IV..AVEIE.EFVCDALPCAL.GMN..LMS.YI.FVAD.LL.ALGYDK.YN..NPFDW | |
Retrocopy | LRTKLTEERVRGIVADAVEIEREFVCDALPCALVGMNGDLMSKYIEFVADRLLDALGYDKMYNAQNPFDW |
Parental | MEFISLQGKSNFFERRVADYQKASVMSSLQDNGKNFEFKLDEDF |
ME.ISLQGK.NFFE.RV..YQKASVMSSL..NG...EFKLDEDF | |
Retrocopy | MELISLQGKTNFFEKRVGEYQKASVMSSLNGNGDTHEFKLDEDF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00025p00110680 | 1 retrocopy | |
Brassica rapa | Bra014962 | 1 retrocopy | |
Prunus persica | PRUPE_ppa008063mg | 1 retrocopy | |
Solanum lycopersicum | Solyc01g080210.2 | 1 retrocopy |
retro_slyc_6 ,
|
Theobroma cacao | TCM_020494 | 1 retrocopy | |
Vitis vinifera | VIT_05s0020g02560 | 1 retrocopy |