RetrogeneDB ID: | retro_btau_1342 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 4:33461570..33462441(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.101639 | ||
Ensembl ID: | ENSBTAG00000014102 | ||
Aliases: | WDR77, MEP50 | ||
Description: | methylosome protein 50 [Source:RefSeq peptide;Acc:NP_001015584] |
Percent Identity: | 67.58 % |
Parental protein coverage: | 84.8 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MRKETPPPLV-PPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL-FKDPCAAP |
M.KETP..LV.P.........P.....M...LEAA.Y..DG..LL.AS.LS..CWAG.L.L.F......P | |
Retrocopy | MQKETPSFLV>PHPVAKSGTLPLTRLPM*QVLEAALYLFDGMFLLQASNLSDHCWAGPLRL<FQGRFVPP |
Parental | NEGFCSAGVQTEAGVADLTWVGDRGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT |
..............VA.LTW.GDRGI.VASD.GAVELWELDENETLI..KFCKY.H.DIVSTVSVLSSGT | |
Retrocopy | PRKVSASLESRQRRVANLTWIGDRGIVVASDPGAVELWELDENETLIDNKFCKYKHNDIVSTVSVLSSGT |
Parental | HAVS-GSKDFCIKVWDLAQQMVLNSYRAHSGQVTCVAASPHKDSVFLSCGEDNRILLWDTRCPKPASQMG |
.AVS.GSKDF.IKV.DLA.QMV.NSYRAHSGQ.TCVAA..HKD.VFLSCGEDNRI.L.D..CPKPASQMG | |
Retrocopy | QAVS>GSKDFWIKV*DLARQMVQNSYRAHSGQATCVAAFLHKDPVFLSCGEDNRIVLEDICCPKPASQMG |
Parental | CSASGYLPTSLTWHPQQSEVFVFGDENGTVSLVDTKSAGCALSSVVHSQCVTGLVFSPHSAPFLASVSED |
..ASGYL..SL..HPQQ.EVFVFGDENGTV..VDTKSA.CALSSVV.S.C..G.VFSPHSAPFLASVS.. | |
Retrocopy | HGASGYLLASLALHPQQTEVFVFGDENGTVPPVDTKSASCALSSVVQS*CISGPVFSPHSAPFLASVSHN |
Parental | CSLAVLDSGLSEV |
.SLAVLD..LSEV | |
Retrocopy | YSLAVLDLDLSEV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .34 RPM |
ERP005899_muscle | 0 .00 RPM | 9 .03 RPM |
SRP017611_brain | 0 .00 RPM | 9 .96 RPM |
SRP017611_kidney | 0 .06 RPM | 14 .76 RPM |
SRP017611_liver | 0 .00 RPM | 6 .72 RPM |
SRP030211_testis | 0 .16 RPM | 17 .82 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014102 | 1 retrocopy |
retro_btau_1342 ,
|
Choloepus hoffmanni | ENSCHOG00000013829 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013344 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006521 | 1 retrocopy | |
Homo sapiens | ENSG00000116455 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005208 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003311 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003918 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007801 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001033 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001098 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010325 | 1 retrocopy |