RetrogeneDB ID: | retro_ptro_2026 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 4:157601914..157602538(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR77 | ||
Ensembl ID: | ENSPTRG00000001098 | ||
Aliases: | WDR77, OVGP1 | ||
Description: | Pan troglodytes WD repeat domain 77 (WDR77), mRNA. [Source:RefSeq mRNA;Acc:NM_001246481] |
Percent Identity: | 73.11 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP |
L.S...AVSGSKD..IK.WDLA.QV.L.SYR.HA.QVTC.AASP.KDSVFLSCSED.RIL.WDT..P.KP | |
Retrocopy | LPSVFSAVSGSKDFSIKDWDLALQVALNSYRSHAGQVTCAAASPRKDSVFLSCSEDSRILFWDTL*P<KP |
Parental | ASQIGCSAPGYLPTSLAWHPQQSEVFAFG-DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL |
.SQ.GC.A.G.LPTSLAWHPQQSEVF.F..D.NGTVSLVDTK.....L.SAV..QCV.GLVFS.H.VPF. | |
Retrocopy | TSQVGCIASGCLPTSLAWHPQQSEVFIFV<DGNGTVSLVDTKRGRGALGSAVQDQCVIGLVFSSHRVPFP |
Parental | ASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH-IVPTEPLPAPGPASV |
A..SED.SLAVLDSSLSE.FRS..H.D..RDA..SPLNH.LLTTVGWDHQVV.H..VPTEPLPAPGP.SV | |
Retrocopy | AFYSEDGSLAVLDSSLSEVFRSRGHCDLARDAA*SPLNHFLLTTVGWDHQVVCH<QVPTEPLPAPGPESV |
Parental | TE |
.E | |
Retrocopy | AE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 18 .21 RPM |
SRP007412_cerebellum | 0 .00 RPM | 15 .27 RPM |
SRP007412_heart | 0 .00 RPM | 22 .56 RPM |
SRP007412_kidney | 0 .00 RPM | 36 .04 RPM |
SRP007412_liver | 0 .00 RPM | 15 .42 RPM |
SRP007412_testis | 0 .11 RPM | 24 .34 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2995 |
Pongo abelii | retro_pabe_2482 |
Macaca mulatta | retro_mmul_1917 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014102 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013829 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013344 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006521 | 1 retrocopy | |
Homo sapiens | ENSG00000116455 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005208 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003311 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003918 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007801 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001033 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001098 | 1 retrocopy |
retro_ptro_2026 ,
|
Tupaia belangeri | ENSTBEG00000010325 | 1 retrocopy |