RetrogeneDB ID: | retro_hsap_2995 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 4:155445334..155445958(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250609 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | WDR77 | ||
Ensembl ID: | ENSG00000116455 | ||
Aliases: | WDR77, MEP-50, MEP50, Nbla10071, p44, p44/Mep50 | ||
Description: | WD repeat domain 77 [Source:HGNC Symbol;Acc:29652] |
Percent Identity: | 73.11 % |
Parental protein coverage: | 61.11 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP-KP |
L.S...AVSGSKD..IK.WDLA.QV.L.SYR.HA.QVTC.AASP.KDSVFLSCSE..RIL.WDT..P.KP | |
Retrocopy | LPSVFSAVSGSKDFSIKDWDLALQVALNSYRSHAGQVTCAAASPRKDSVFLSCSENSRILFWDTL*P<KP |
Parental | ASQIGCSAPGYLPTSLAWHPQQSEVFVFG-DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFL |
.SQ.GCSA.G.LPTSLAWHPQQSEVF.F..D.NGTVSLVDTK.....L.SAV..QCV.GLVFS.H.VPF. | |
Retrocopy | TSQVGCSASGCLPTSLAWHPQQSEVFIFV<DGNGTVSLVDTKRGRGALGSAVQDQCVIGLVFSSHRVPFP |
Parental | ASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH-VVPTEPLPAPGPASV |
AS.SED.SLAVLDSSLSE.FRS..H.D..RDA..SPLNH.LLTT.GWDHQVV.H..VPTEPLPAPGP.SV | |
Retrocopy | ASYSEDGSLAVLDSSLSEVFRSRGHCDLARDAA*SPLNHFLLTTMGWDHQVVCH<QVPTEPLPAPGPESV |
Parental | TE |
.E | |
Retrocopy | AE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 10 .87 RPM |
bodymap2_adrenal | 0 .02 RPM | 17 .01 RPM |
bodymap2_brain | 0 .00 RPM | 7 .10 RPM |
bodymap2_breast | 0 .00 RPM | 12 .55 RPM |
bodymap2_colon | 0 .00 RPM | 7 .79 RPM |
bodymap2_heart | 0 .00 RPM | 13 .09 RPM |
bodymap2_kidney | 0 .00 RPM | 23 .62 RPM |
bodymap2_liver | 0 .00 RPM | 11 .66 RPM |
bodymap2_lung | 0 .05 RPM | 8 .19 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .91 RPM |
bodymap2_ovary | 0 .00 RPM | 22 .03 RPM |
bodymap2_prostate | 0 .00 RPM | 15 .05 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 11 .60 RPM |
bodymap2_testis | 0 .00 RPM | 14 .52 RPM |
bodymap2_thyroid | 0 .00 RPM | 12 .96 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 18 .27 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2026 |
Pongo abelii | retro_pabe_2482 |
Macaca mulatta | retro_mmul_1917 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014102 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000013829 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000013344 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000006521 | 1 retrocopy | |
Homo sapiens | ENSG00000116455 | 1 retrocopy |
retro_hsap_2995 ,
|
Gorilla gorilla | ENSGGOG00000005208 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003311 | 1 retrocopy | |
Mus musculus | ENSMUSG00000000561 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000003918 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000007801 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000001033 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000001098 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000010325 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .03 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |