>retro_btau_1360
CAGCCAGCCCCGGCCTCCAGCGCAGCCGAGGTCTCGGGACCCATGCACTCCTCCGGCGCGCTCGAGGTCCCTGGCGCGCC
AGCCGTCCCGGGAGCGTCTGCCCACCCTGGCGCGGTGTCTGGCGTGGCCCCTGGGGCCGGCCCCGCCCCCGCCACGGGTC
CAGGCCCCCGTCGGAGGCCAGTAACACCTGCTGCCAAGCGCCATCGCTGCCCCTTCCCGGGCTGCAACAAAGCCTATTAC
AAGTCATCACATCTGAAGTCCCACCAGCGCACCCACACGGGTGAGCGCCCGTTCTCCTGCGACTGGCTCGACTGCGACAA
GAAGTTTACGCGCTCCGACGAGCTGGCCCGCCACTACAGGACGCACACGGGCGAGAAACGCTTCTCCTGCCCACTCTGCC
CCAAGCAGTTCTCTCGGAGCGACCACCTGACCAAGCACGCCCGCCGCCACCCATCCTACCATCCTGATATGATCGAGTAC
AGGGGGCGCCGTCGCACGCCCCGCGTCGACCCGCAACCCGCCAACCTGGTGGACAGCTCCGGCTCCGTCCCCGGGCAGGT
GCCCAGCT
ORF - retro_btau_1360 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
55.44 % |
Parental protein coverage: |
94.58 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | RPGPGGSVRGRGGPPPAARLSARWASPRGGGARAEQSAAPGGASPASSSSAASSPSSGRAPGAAPAAAKS |
| .P.P..S.....GP............P...GA.A...A...G..P......A..P...R.P.....AAK. |
Retrocopy | QPAPASSAAEVSGPMHSSGALEVPGAPAVPGASAHPGAV-SGVAPGAGPAPATGPGPRRRP--VTPAAKR |
|
Parental | HRCPFPGCAKAYYKSSHLKSHLRTHTGERPFACDWPGCDKKFARSDELARHHRTHTGEKRFPCPLCSKRF |
| HRCPFPGC.KAYYKSSHLKSH.RTHTGERPF.CDW..CDKKF.RSDELARH.RTHTGEKRF.CPLC.K.F |
Retrocopy | HRCPFPGCNKAYYKSSHLKSHQRTHTGERPFSCDWLDCDKKFTRSDELARHYRTHTGEKRFSCPLCPKQF |
|
Parental | TRSDHLTKHARRHPGFRPELLRRQGTRSTSPSDSLPCSLAGS-PAPSPVPSPA |
| .RSDHLTKHARRHP...P......G.R.T...D..P..L..S.PAPSP...PA |
Retrocopy | SRSDHLTKHARRHPSYHPDMIEYRGRRRTPRVDPQPANLVDS>PAPSPGRCPA |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
0 .07 RPM |
ERP005899_muscle |
0 .00 RPM |
3 .38 RPM |
SRP017611_brain |
0 .00 RPM |
3 .75 RPM |
SRP017611_kidney |
0 .00 RPM |
2 .67 RPM |
SRP017611_liver |
0 .08 RPM |
2 .04 RPM |
SRP030211_testis |
0 .08 RPM |
4 .29 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1360 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1360 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1360 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
4 retrocopies.