>retro_btau_1675
ATGACTGACTCCAAGTACTTCACAACCAATAAAAAGGGAGAAATCTTTGAATTAAAAGCTGAACTCAACAATGAAAAGAA
AGAAAAGAGGAAGGGGGCTGTGAAGAAACTGATTGCTGCTATGACTGTGGGGAAAGATGTTAGCACTCTCTTTCCAGATA
TAGTGAACTATATGCAGACAGACAACCTGGAACTGAAGAAGCTTGTGTATCTCTACTTGATGAACTATGCCAAGAGTCAG
CCAGACATGGCCATCATGGCTGTCAACAGCTTTGTGAAGGACTGTAAAGATCCCAATCCTCTGACTCAAGCCTTGGCAGT
CAGAACCATGCAGTGCATCCGGATGAACAAGATTACAGAATATCTCTGTGAGCCCCTCTGCAAGTGCTTAAAGGATGATG
ATCCCTACGTCCAGAAGACAGCAGCAGTCTGTGTGGCAAAACTCCATAACATCAACGCCCAGATGATGGAAGATCAGGAA
TTTCTGGATTCTCTGTGGGATCACATAGCAGATTCAAATCCAATGATGGTAGCTAATGCTGTAGCAGCATTATCTGAAAT
CAGTGAATCTCACCCGAACATCAACTTACTCGATCTATATCCACAGAATATTAATAAGCTACTGACAGCCCTGAATGAGT
GCACTGAATGGGGCCAGATTTTCACCCTGGACTGCCTGTTTAATTACAATCCTAAAGATGACCGGGAGGCTCAGAACATC
TGTGAGCGGATAACTCCCTGGTTATCTCATGCCAACTCAGCAGTGGTGCTTTAGCAGTAAAAATCCTAATGAAATTTCTA
GAGTTTCTACCCAAGGACTCTGACTACTACAATATGCTGCTGAAGAAGTTGGCCCCTCCACTTGTCACTTGGCTGTCTGG
GGAGCCAGAGGTGCAATAC
ORF - retro_btau_1675 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
89.04 % |
Parental protein coverage: |
50.17 % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MTDSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVY |
| MTDSKYFTTNKKGEIFELKAELNNEKKEKRK.AVKK.IAAMTVGKDVS.LFPD.VN.MQTDNLELKKLVY |
Retrocopy | MTDSKYFTTNKKGEIFELKAELNNEKKEKRKGAVKKLIAAMTVGKDVSTLFPDIVNYMQTDNLELKKLVY |
|
Parental | LYLMNYAKSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKT |
| LYLMNYAKSQPDMAIMAVNSFVKDC.DPNPL..ALAVRTM.CIR..KITEYLCEPL.KCLKD.DPYV.KT |
Retrocopy | LYLMNYAKSQPDMAIMAVNSFVKDCKDPNPLTQALAVRTMQCIRMNKITEYLCEPLCKCLKDDDPYVQKT |
|
Parental | AAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTA |
| AAVCVAKLH.INAQM.EDQ.FLDSL.D.IADSNPM.VANAVAALSEISESHPN.NLLDL.PQNINKLLTA |
Retrocopy | AAVCVAKLHNINAQMMEDQEFLDSLWDHIADSNPMMVANAVAALSEISESHPNINLLDLYPQNINKLLTA |
|
Parental | LNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVL-SAVKVLMKFLELLPKESDYYNM |
| LNECTEWGQIF.LDCL.NYNPKDDREAQ.ICER.TP.LSHANSAVVL..AVK.LMKFLE.LPK.SDYYNM |
Retrocopy | LNECTEWGQIFTLDCLFNYNPKDDREAQNICERITPWLSHANSAVVL<LAVKILMKFLEFLPKDSDYYNM |
|
Parental | LLKKLAPPLVTLLSGEPEVQY |
| LLKKLAPPLVT.LSGEPEVQY |
Retrocopy | LLKKLAPPLVTWLSGEPEVQY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
4 .04 RPM |
ERP005899_muscle |
0 .00 RPM |
48 .94 RPM |
SRP017611_brain |
0 .05 RPM |
122 .06 RPM |
SRP017611_kidney |
0 .06 RPM |
95 .96 RPM |
SRP017611_liver |
0 .00 RPM |
19 .18 RPM |
SRP030211_testis |
0 .10 RPM |
706 .96 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1675 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1675 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1675 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
6 parental genes, and
7 retrocopies.