RetrogeneDB ID: retro_mputfur_704

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896937.1:4730255..4731709(-)
• Located in intron of: ENSMPUG00000010089

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: AP2B1
• Ensembl ID: ENSMPUG00000014910
• Aliases: None
• Description: adaptor-related protein complex 2, beta 1 subunit [Source:HGNC Symbol;Acc:563]

Sequence

>retro_mputfur_704
CTGGCTAATGCTGTAGGAGCATGCTCTAAAATCAGCGAATCTTGCCCAAACAGCAACCTACTTAATCTGAACCAAAGAAC
ATTAATCAGCTGCTGACAGCCCTGAATGAGTGGGCTGGATGGGCTCAGATTTTCATCTTGGACCTTCTGTCTCATTACAA
CCCTAAAGATGAGCGCCAGGCTCAGAGCACCTGTGAGCCTGTAACTCACTAGCGGTTTCTTGCCAACTGAACCGCGGAGC
TTTCAGCAGTAAGAGTCCTAGTGAAGTTTCTAGAGTTGTTATTCAAGGACTGGGAATACTGCAATATGCTGCTGAAGGAA
CTGCCCCTGTGCTTGTCACTGTGCTGCCCAGGGAGCCGGAGGTATAGTATGTTACCCTGAAGAGTATCAGTGTAATTTTC
CAGAAAGGCCCCAAATCTTGAAGCAGAAAATCGAAGTCTTCTTTGTGAACCACAGTGATCCCATCTATTCTAAACTAGAG
CAGTTGGACATTGTGATTCGTTTGGTGTTCCGAGCCAACACCGCTCAGGTTCTGGCAGAATTAGAGGAATACACCACAGA
GGTGGATGCTGGCTTTGCTTGTGAAGCTGTGCAGGCCACTGGCCGGTGAGCCATCAAAGTGAGCTATCTGCAGGGTGCCG
TGTGTGCACGCTGTTTGAGCTCCTCCAGACCAGAGGAAATTATGTGATCCAAGAGGTAACTGTTGTTATCAGGGAGAGCT
TTCACAAATATGCATCAAGTAGGAAAGCACCATGTCACTCGGTCTGAGAACTTAGACTCGCTGGATGCACCAGACGCTCG
AGCAGCTATGATCTGGACTGGGGGAGAACATGCGGAGAGAACGGACAGTGCTTCAAGTCACTGGAGAGCTTTCTGGAGGG
TTTTCCCGACGAAAGCCCAGGTGTAGCTCATTCTTCTTACTGCCTTTGTGAAACTGTTTCTCAAGAAACCATGAGAAACA
CAGGAGCTGCCATAGTGAGTCTTGAGTTTGGCAACACAGGATTCTGCTAATTCTGACTTTCGAGGCTGGGGCTGGATTTA
TTGGTTCCTTTTCTCAACAGACCCTGTCACAGCCAGAGAAGCAATCTTGTTTGAGAAGCCACTGGTGTCTGAGGAGGCAG
ATCTTAGTAAGATCAACTCTGCTGGAGGGACTAATCTGCCACATGGGTTCTTTGGCCTCCATGTACCATAGCCACCCAAT
ACTTTTATAGAAGGGAGTCATGCAATCCAACACAAACACTCGCCAGTACAACATGGGAGCACTGATACAGGTGACAGCCC
TTCCCACACCACCACTGCCACCAACCTAAAACAGGCTCAGGTTAGCCGCTCCCAAGGTGACCTTCTAGGAGACCTTTTAA
ACCATGACCTTGGCCCCCAGTCAATGTGCTACTGGCGTCCTCCATTCAGATGGGAGCAGTGGGTCTCTTGGGAGGAGGAC
TAGATGGTCTGGTG

Alignment

ORF - retro_mputfur_704 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.19 %
• Parental protein coverage: 54.95 %
• Number of stop codons detected: 9
• Number of frameshifts detected: 9

Retrocopy - Parental Gene Alignment:

Parental  VANAVAALSEISESHPNSNLLDLN-PQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVT
          .ANAV.A.S.ISES.PNSNLL.LN.P.NIN.LLTALNE...W.QIFILD.LS.YNPKD.R.AQS.CE.VT
Retrocopy LANAVGACSKISESCPNSNLLNLN<PKNINQLLTALNEWAGWAQIFILDLLSHYNPKDERQAQSTCEPVT

Parental  PRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKL-APPLVTLLSGEPEVQYVALRNINLIVQK-R
          .....AN....LSAV.VL.KFLELL.KD..Y.NMLLK.L.AP.LVT.L..EPEV.YV.L..I..I.QK.R
Retrocopy H*RFLAN*TAELSAVRVLVKFLELLFKDWEYCNMLLKEL<APVLVTVLPREPEV*YVTLKSISVIFQK<R

Parental  PEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIK
          P.ILKQ.I.VFFV...DPIY.KLE.LDI.IRL...AN.AQVLAEL.EY.TEVD..F...AV.A.GR.AIK
Retrocopy PQILKQKIEVFFVNHSDPIYSKLEQLDIVIRLVFRANTAQVLAELEEYTTEVDAGFACEAVQATGR*AIK

Parental  V-EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN-KYESIIA-TLCENLDSLDEPDARAAMIW
          V.E.SA...V.TL..L.QT..NYV.QE..VVIR..F.KY...K.ES....T..ENLDSLD.PDARAAMIW
Retrocopy V<ELSAGCRVCTLFELLQTRGNYVIQEVTVVIRESFHKYAS<K*ESTMS<TRSENLDSLDAPDARAAMIW

Parental  IVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPSETQELVQQVLSLATQDSDNPDLR
          ..GE.AER.D.A......F...F.....QV.L.LLTA.VKLFLKKP.ETQEL...VLSLATQDS.N.D.R
Retrocopy TGGEHAERTDSASSHWRAFWRVFPTKA-QV*LILLTAFVKLFLKKP*ETQELP**VLSLATQDSANSDFR

Parental  DRGYIYWRLLSTDPVTAKEVVLSEKPLISEETD-LIEPTLLDELICHIGSLASVYHK-PPNAFVEGSHGI
          ..G.IYW.L.STDPVTA.E..L.EKPL.SEE.D.L...TLL..LICH.GSLAS.YH..PPN.F.EGSH.I
Retrocopy GWGWIYWFLFSTDPVTAREAILFEKPLVSEEAD>LVRSTLLEGLICHMGSLASMYHS<PPNTFIEGSHAI

Parental  HRKHLPIHHGSTDAGDSPVGTTTATNLEQPQVIPSQGDLLGDLLNLDLG-PPVNVPQVSSMQMGAVDLLG
          ..KH.P..HGSTD.GDSP..TTTATNL.Q.QV..SQGDLLGDLLN.DLG.PPVNV...SS.QMGAV.LLG
Retrocopy QHKHSPVQHGSTDTGDSPSHTTTATNLKQAQVSRSQGDLLGDLLNHDLG<PPVNVLLASSIQMGAVGLLG

Parental  GGLDSLL
          GGLD.L.
Retrocopy GGLDGLV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_704 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_704 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000020316	1 retrocopy	retro_btau_1675,
Choloepus hoffmanni	ENSCHOG00000010864	1 retrocopy	retro_chof_2310,
Callithrix jacchus	ENSCJAG00000014853	1 retrocopy	retro_cjac_1850,
Myotis lucifugus	ENSMLUG00000002837	1 retrocopy	retro_mluc_2443,
Mustela putorius furo	ENSMPUG00000014910	1 retrocopy	retro_mputfur_704 ,
Nomascus leucogenys	ENSNLEG00000013939	2 retrocopies	retro_nleu_1925, retro_nleu_2554,