>retro_btau_1842
ATGTGAAGATACAGAAATGAAATGACTGTTCAACTGCAAAAGAACAAAAGAGATGAACAATTACTGAAAAAAGAAATGTT
CCCCAAGAAAAAATTTAGAAGATTCAGATGCTGATTCTGATTTTAAAGCACACAATATAATACTAGAAACTATAATGCAG
AATGCTACAAGTGATAAATACCCAGTGGCCCAGTTGAGTGCTATACAGGCTGCAAGAAAACTTTTATCCAGTGACAGAAA
TCCACCAGGTGATGATCTAATAAAACCTTGGATTTTACCAATTCTAGTGAAGTGTCTAGAAAGGGATGATAATCCTTCAT
TACAGTTTGAAGCTGTATAAGTGTTAACTAATATAGCATCAGGAAGTTCTGCATAGACTCAAACTATTATACAGTTTAAT
ACTGTACCTCTTTTTCTAAGACTTCTCCTTTCAGCCACATCAGAATGTTTGTAAGCAAGCAGTATGGGCTTTGGGGAATA
TTGCAGGTGATGATCCTCAGAGTAGAGATTATGTCATGTTCACTGAGAGTTGTCAAAATTATTCTGTCTTTTATCAGTCC
CTCCATTCTTATTGCCCTCTTTTGGAATGTCTCATGGATTATTTTCAGTCTCTGCAGAAATAAGGACCGATTCCATCACC
TATGGAGACAGTCTGGAGATTTTGCCAGCATTGTGTGTCTTAATATATCATATGGACATGAACACTCTTGTGAATACTGT
TTGGGTGCTGTCACATCTGATAGATGGAATTAAAGAGCAGATACAGATGGTTATTGATTCAAGGGCTGTGCCATTTCTTT
TGTCCCTTCTGAGCCATCAGGAAATGAAAGTTCAAACAGCAGCACTGAGAGCAGTTGGCAACACAGTGACAGGTGCCAAC
GAGCAGACCCAGGTTGTTCTCAACTGCAATGTCCTGTCACACTTCCCAAATTTCTTATCACATCCAAAGAAGAAGATAAA
TAAGGAAGCAGTGTGATTCCTTTCCAACATTACAGCAGGCAACCAGCAACAAGTTCAAGCTGTAATAGATGTTGGATTAA
TCCTATGATTATTTATCAGCTTGCTAAGGGGGACTTTGGAACACAAAAGGGAGCTTTGGGGGCAATTAGCAACTTAATGA
TAAGTGGCAAAAAATATCAAGTTGAGTACTTTGTACAGCACAAT
ORF - retro_btau_1842 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
76.77 % |
Parental protein coverage: |
77.87 % |
Number of stop codons detected: |
4 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | MRRHRNEVTVELRKNKRDEHLLKK-RNVPQEE-SLEDSDVDADFKAQNVTLEAILQNATSDN-PVVQLSA |
| M.R.RNE.TV.L.KNKRDE.LLKK.RNVPQE...LEDSD.D.DFKA.N..LE.I.QNATSD..PV.QLSA |
Retrocopy | M*RYRNEMTVQLQKNKRDEQLLKK<RNVPQEK<NLEDSDADSDFKAHNIILETIMQNATSDKYPVAQLSA |
|
Parental | VQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIASGTSAQTQAVVQSNAVPL |
| .QAARKLLSSDRNPP.DDLIK..ILPILVKCLERDDNPSLQFEA...LTNIASG.SA.TQ...Q.N.VPL |
Retrocopy | IQAARKLLSSDRNPPGDDLIKPWILPILVKCLERDDNPSLQFEAV*VLTNIASGSSA*TQTIIQFNTVPL |
|
Parental | FLRLLHS-PHQNVCEQAVWALGNIIGDGPQCRDYVI-SLGVVKPLLSFINPSIPITFLRNVTWVIVNLCR |
| FLRLL.S.PHQNVC.QAVWALGNI.GD.PQ.RDYV..SL.VVK..LSFI.PSI.I....NV.W.I..LCR |
Retrocopy | FLRLLLS>PHQNVCKQAVWALGNIAGDDPQSRDYVM>SLRVVKIILSFISPSILIALFWNVSWIIFSLCR |
|
Parental | NKD-PPP-PMETV-QEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQ |
| NKD.P.P.PMETV..EILPALCVLIYH.D.N.LV.TVW.LS.L.DG..EQIQMVIDS..VPFL..LLSHQ |
Retrocopy | NKD<PIPSPMETV<LEILPALCVLIYHMDMNTLVNTVWVLSHLIDGIKEQIQMVIDSRAVPFLLSLLSHQ |
|
Parental | EVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQQQVQAVID |
| E.KVQTAALRAVGN.VTG..EQTQVVLNC.VLSHFPN.LSHPK.KINKEAV.FLSNITAGNQQQVQAVID |
Retrocopy | EMKVQTAALRAVGNTVTGANEQTQVVLNCNVLSHFPNFLSHPKKKINKEAV*FLSNITAGNQQQVQAVID |
|
Parental | AGLI-PMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQN |
| .GLI.PMII.QLAKGDFGTQK.A..AISNL.ISG.K.QVEY.VQ.N |
Retrocopy | VGLI<PMIIYQLAKGDFGTQKGALGAISNLMISGKKYQVEYFVQHN |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .00 RPM |
3 .32 RPM |
ERP005899_muscle |
0 .00 RPM |
9 .34 RPM |
SRP017611_brain |
0 .00 RPM |
17 .27 RPM |
SRP017611_kidney |
0 .00 RPM |
12 .39 RPM |
SRP017611_liver |
0 .00 RPM |
8 .61 RPM |
SRP030211_testis |
0 .00 RPM |
10 .03 RPM |
Bos taurus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_btau_1842 retrocopy.
Bos taurus was not studied using FANTOM5 data.
retro_btau_1842 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_1842 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
5 retrocopies.