RetrogeneDB ID: | retro_itri_1777 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393763.1:159790..160615(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA3 | ||
Ensembl ID: | ENSSTOG00000003006 | ||
Aliases: | None | ||
Description: | karyopherin alpha 3 (importin alpha 4) [Source:HGNC Symbol;Acc:6396] |
Percent Identity: | 81.43 % |
Parental protein coverage: | 55.82 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | SLGVVKPLLSFIN-PSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWA |
SLG...PLLSFIN.P..P.....NV.W.I.NL.RNKDP.P.METVQEILPALCVLIY..DINILV.TVWA | |
Retrocopy | SLGLIQPLLSFIN>PPFPLPS-QNVLWIIANLYRNKDPLPRMETVQEILPALCVLIYSMDINILVGTVWA |
Parental | LSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEVKTQHTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNL |
LSYLTDG.NEQIQMVIDSGVVPFLV..L.HQEV..Q.TAALRA.GNIVTGTDEQTQ.VL.CDV.SH.PNL | |
Retrocopy | LSYLTDGANEQIQMVIDSGVVPFLVSFLHHQEVNVQ-TAALRAIGNIVTGTDEQTQ-VLYCDV*SHSPNL |
Parental | LSHPKEKINKEAVWFLSNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWA-ISNLTISGRKDQ |
LS.PKEKINKE..WFLSNITAGN.QQ.QAVIDA.LIPMIIHQLAK.DFGTQKEAAW..I.NLTISGRKD. | |
Retrocopy | LSLPKEKINKESLWFLSNITAGNKQQIQAVIDAELIPMIIHQLAKEDFGTQKEAAWT<IGNLTISGRKDK |
Parental | VEYLVQQNVIPPFCNLLSVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDI |
VEY.VQ.NVI..F.NLLSVKDSQVVQV.LDGLKNILI.AGDEASTIAEIIEECGGLEKIEVLQQ.EN.DI | |
Retrocopy | VEYHVQ*NVISLF*NLLSVKDSQVVQVILDGLKNILIVAGDEASTIAEIIEECGGLEKIEVLQQ*ENKDI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000004850 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014945 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000003006 | 1 retrocopy |
retro_itri_1777 ,
|
Tarsius syrichta | ENSTSYG00000008134 | 1 retrocopy |