RetrogeneDB ID: | retro_btau_534 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:64603588..64604291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000006725 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB6 | ||
Ensembl ID: | ENSBTAG00000013390 | ||
Aliases: | None | ||
Description: | Proteasome subunit beta type-6 [Source:UniProtKB/Swiss-Prot;Acc:Q3MHN0] |
Percent Identity: | 70.17 % |
Parental protein coverage: | 98.74 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAATLVAARGTRPAPAWGPEAIAPDWENREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTP |
MAATL.AARG..PAP.WGP.AIA.DWEN.EVSTG..IMAVQFDG...L.A.SRTTT.SY..N.VTDKLT. | |
Retrocopy | MAATLAAARGEGPAPVWGPKAIASDWENQEVSTGIPIMAVQFDGDMILEANSRTTTESYTTNQVTDKLTL |
Parental | IHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLV-HTAASLFKEMCYRYREDLMAGIIIAGWDP |
IH..IFCC.SGSAAD.QA.ADAVTYQLG.HS.EL.EPPL..HTAASL.KEMCY.YREDLMAGII..GWD. | |
Retrocopy | IHGGIFCCHSGSAADPQAEADAVTYQLGLHSVELTEPPLD<HTAASLLKEMCYQYREDLMAGIITEGWDS |
Parental | QEGGQVYSVPMGGMMVRQPFAIGGSGSS-YIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVI |
QEGGQV.SVPM.GMMVR..F.I.G...S...Y......Y..G....ECLQ.TA..L.LAM..DGSS..VI | |
Retrocopy | QEGGQVSSVPMEGMMVR*AFTI-GDSGS<LLYLWLC*GYLPGRHDKECLQSTASTLSLAMKQDGSSSRVI |
Parental | RLAAIAEPGVERQVLLGDQIPKFTIATL |
RLAAIAE.GVE.QVLLGD.I..FTIATL | |
Retrocopy | RLAAIAESGVEWQVLLGDEIVQFTIATL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 11 .97 RPM |
ERP005899_muscle | 0 .00 RPM | 49 .73 RPM |
SRP017611_brain | 0 .00 RPM | 26 .08 RPM |
SRP017611_kidney | 0 .00 RPM | 39 .42 RPM |
SRP017611_liver | 0 .00 RPM | 33 .53 RPM |
SRP030211_testis | 0 .01 RPM | 29 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013390 | 2 retrocopies |
retro_btau_1734, retro_btau_534 ,
|
Loxodonta africana | ENSLAFG00000012859 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010676 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005554 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009653 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006048 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019551 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006615 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010674 | 1 retrocopy |