RetrogeneDB ID: | retro_tsyr_1807 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_59740:2039..2555(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PSMB6 | ||
Ensembl ID: | ENSTSYG00000010674 | ||
Aliases: | None | ||
Description: | proteasome (prosome, macropain) subunit, beta type, 6 [Source:HGNC Symbol;Acc:9543] |
Percent Identity: | 68.02 % |
Parental protein coverage: | 72.1 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 0 |
Parental | MAATLVAARGVGPAPAWRPEAIAPDWETREVSTGTTIMAVQFDGGVVLGADSRTTTGSYIANQVTDKLTP |
M.ATLVA.RGVGPAPA..P.AIAPDWE..E.STGTTIMAVQFD..VVLG.D.RTTTGSYIA..VTDKLTP | |
Retrocopy | MVATLVASRGVGPAPA*GPGAIAPDWENQEASTGTTIMAVQFDWSVVLGTDPRTTTGSYIASHVTDKLTP |
Parental | IHDHISGSAADTQAVADAITYQL---GFHSIKLNEPPLVHTAARSFKEMCY-YREDLVAGIIMAGWDSQE |
IHDHI........A...A........GFHSI.LNE.PLVHTAA...KEMCY.Y...L.AGII.AGW..QE | |
Retrocopy | IHDHIFCCCLGSAADTQAVADAVT*LGFHSIALNELPLVHTAASLLKEMCYQY*VNLMAGIIVAGWNPQE |
Parental | GRQVYSVPIGGMMVRQPCAIGGSGSSYIYGYV |
G.Q.YS.P.G.MMVRQ..AI.GSGSSYIYG.V | |
Retrocopy | GGQMYSAPMGDMMVRQSFAIRGSGSSYIYGCV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000013390 | 2 retrocopies | |
Loxodonta africana | ENSLAFG00000012859 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010676 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005554 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009653 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000006048 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019551 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006615 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010674 | 1 retrocopy |
retro_tsyr_1807 ,
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