RetrogeneDB ID: | retro_btau_569 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:7480187..7480736(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.77236 | ||
Ensembl ID: | ENSBTAG00000009336 | ||
Aliases: | None | ||
Description: | latexin [Source:RefSeq peptide;Acc:NP_001073809] |
Percent Identity: | 84.15 % |
Parental protein coverage: | 82.43 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | QQGTPHKLFLVQTVEQASLEDIPGRGHKYRLKFSVEEIIQKEVTVNCTAEVLYPPTGQDTAPEVNFTFEG |
.QGTPHK.FL.QTV.QASLED..GRG.K..LKFSVEEIIQKEVTVNC.AEVLYPP.GQDTAPEVNFTFEG | |
Retrocopy | EQGTPHKVFLMQTVNQASLEDMSGRG*KHCLKFSVEEIIQKEVTVNCIAEVLYPPMGQDTAPEVNFTFEG |
Parental | EIGKNPDEEDNTFYQRLKSMKEPLDAQNIPDSFGNVPPEMKPVRHLAWVASGYIIWQNSTENTWYKMAKI |
EIG.NPDEE..TFYQRLKS.KE...AQNIPDSFGNV.PE.KPVR.LAWV.SGYIIWQNSTE.TWYKMA.I | |
Retrocopy | EIGENPDEEGKTFYQRLKSVKETIEAQNIPDSFGNVHPEKKPVRQLAWVSSGYIIWQNSTEGTWYKMAEI |
Parental | QTVKQVQRNDDFIELDYTILLHDIASQEIIPWQMQVLWHPQYG |
QTV.QVQRNDDFIELDYTILL..IASQEII.WQ.QVLWHPQYG | |
Retrocopy | QTV*QVQRNDDFIELDYTILLQEIASQEIIHWQTQVLWHPQYG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 1 .51 RPM |
ERP005899_muscle | 0 .00 RPM | 10 .77 RPM |
SRP017611_brain | 0 .00 RPM | 7 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .59 RPM |
SRP017611_liver | 0 .00 RPM | 0 .60 RPM |
SRP030211_testis | 0 .02 RPM | 4 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009336 | 2 retrocopies |
retro_btau_569 , retro_btau_860,
|
Canis familiaris | ENSCAFG00000009096 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000386 | 1 retrocopy | |
Homo sapiens | ENSG00000079257 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003092 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004963 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004229 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014245 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015571 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013608 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017673 | 3 retrocopies |