RetrogeneDB ID: | retro_mmul_2114 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 6:154472138..154472789(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LXN | ||
Ensembl ID: | ENSMMUG00000004963 | ||
Aliases: | None | ||
Description: | latexin [Source:RefSeq peptide;Acc:NP_001253917] |
Percent Identity: | 64.29 % |
Parental protein coverage: | 98.65 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 5 |
Parental | MEIPPTNYPASRAALVAQNYINYQQGTPHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNC |
.EI..T..PAS.AA.VA.N..NYQ.GTPH.VF..Q.VKQAS.E.IPGRGHKY.LK..VE..I.KQV.VNC | |
Retrocopy | IEISWTHDPASKAASVAVNCLNYQWGTPHKVFLRQRVKQASTENIPGRGHKYHLKCSVE*VILKQVTVNC |
Parental | TAEVLYPLMGQETAPEVNFTFEGE-TGKNPDEEDNTFYQRLKSMKEPLEAQNIPDNFGNVSPEMTLLLHL |
.AE..Y...GQ.TAPE.N.T.EGE..GK.PD.E.NT..Q.LKSMKE.LEAQN.PD...NVSP.M....HL | |
Retrocopy | IAEFPYLTVGQDTAPEINVTCEGE<NGKSPDGENNTSDQKLKSMKESLEAQNVPDILRNVSPKMKPGQHL |
Parental | AWVACGYIIW-QNSTEDTWYKMVKIQ-TVKQVQRNDDFIE-LDYTILLHDIGSQEI-IPWQMQVLWHPQY |
AWV.C.YI.W..NSTE.TWYK..KI..TVK..Q.N.DFIE..DY.ILLHDI.S..I.IPWQMQVLWH.Q. | |
Retrocopy | AWVTCCYITW<ENSTENTWYKSGKIK<TVKKMQKN-DFIE<IDYNILLHDIASRDI>IPWQMQVLWH*QD |
Parental | GTKVKHNSRLPKEV |
G.KVK.N..LP.EV | |
Retrocopy | GAKVKCNLSLPREV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .13 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .75 RPM |
SRP007412_cerebellum | 0 .00 RPM | 1 .81 RPM |
SRP007412_heart | 0 .00 RPM | 5 .42 RPM |
SRP007412_kidney | 0 .00 RPM | 19 .01 RPM |
SRP007412_liver | 0 .00 RPM | 2 .26 RPM |
SRP007412_testis | 0 .00 RPM | 0 .60 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3397 |
Pan troglodytes | retro_ptro_2308 |
Gorilla gorilla | retro_ggor_2300 |
Pongo abelii | retro_pabe_2791 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000009336 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000009096 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000000386 | 1 retrocopy | |
Homo sapiens | ENSG00000079257 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000003092 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004963 | 1 retrocopy |
retro_mmul_2114 ,
|
Nomascus leucogenys | ENSNLEG00000004229 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000014245 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015571 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000013608 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000017673 | 3 retrocopies |