RetrogeneDB ID: | retro_btau_609 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 15:70318718..70319018(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | FAM96B | ||
Ensembl ID: | ENSBTAG00000013931 | ||
Aliases: | None | ||
Description: | mitotic spindle-associated MMXD complex subunit MIP18 [Source:RefSeq peptide;Acc:NP_001179967] |
Percent Identity: | 58.25 % |
Parental protein coverage: | 63.19 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | IFDLIRSINDPEHPLTLEELNVVEQVRVQVSDPESTVAVAFTPTIPHCSMATLIGLSIKVKLLRSLPQRF |
IF.LI.SINDP.HPL.LEE.N.VEQV..Q...PE.TVA.AFT....HCSMAT.IG.S.......S.PQ.F | |
Retrocopy | IFNLISSINDPGHPLMLEEFNTVEQVYIQARNPERTVAMAFTIIVLHCSMATIIGQSC---FIHSFPQHF |
Parental | KMDVHITPGTHASEHAVNKQLADKERVAAALEN |
.MD.HI..GT..S.HAVNK.....E..AAAL.N | |
Retrocopy | RMDMHIITGTRDSKHAVNKPPGNNEQIAAALGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 5 .62 RPM |
ERP005899_muscle | 0 .00 RPM | 26 .13 RPM |
SRP017611_brain | 0 .00 RPM | 12 .38 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .92 RPM |
SRP017611_liver | 0 .00 RPM | 9 .51 RPM |
SRP030211_testis | 0 .00 RPM | 23 .96 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017164 | 1 retrocopy | |
Bos taurus | ENSBTAG00000002012 | 2 retrocopies | |
Bos taurus | ENSBTAG00000013931 | 1 retrocopy |
retro_btau_609 ,
|
Canis familiaris | ENSCAFG00000020394 | 2 retrocopies | |
Felis catus | ENSFCAG00000029216 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005303 | 2 retrocopies | |
Mus musculus | ENSMUSG00000031879 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000004698 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000005006 | 2 retrocopies |