RetrogeneDB ID: | retro_btau_612 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 16:12657200..12657953(+) | ||
Located in intron of: | ENSBTAG00000016703 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000047703 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNN2 | ||
Ensembl ID: | ENSBTAG00000020764 | ||
Aliases: | None | ||
Description: | Calponin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q3SYU6] |
Percent Identity: | 82.21 % |
Parental protein coverage: | 87.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KEAELRSWIE-GLTGLSVGPDFQKGLKDGIILCTLMNKLQPGSVPKINRSMQNWHQLENLSNFIKAMVSY |
.E.EL.S.IE.GLTGLS..PDFQKGLKDG.ILCT.MNKLQ.GS.PK.NRSMQ.WHQLENLSNFIKAMVSY | |
Retrocopy | EEVEL*SQIE<GLTGLSINPDFQKGLKDGTILCTCMNKLQLGSTPKTNRSMQKWHQLENLSNFIKAMVSY |
Parental | GMNPVDLFEANDLFESGNLTQVQVSL-LALAGKAKTKGLQSGVDIGVKYSEKQERNFDDATMKAGQCVIG |
.MNP.DL.EANDLFESGNL.QVQVSL.LALA.KAKTKG.QSGVD.G.KY.EK..R..DDAT.K.GQCVIG | |
Retrocopy | SMNPADLLEANDLFESGNLMQVQVSL>LALARKAKTKGMQSGVDTGIKYLEK*GRDSDDATVKMGQCVIG |
Parental | LQMGTNKCASQSGMTAYGTRRHLYDPKNHILPPMDHSTISLQMGTNKCASQVGMTAPGTRRHIYDTKLGT |
...GTNKCASQS.MTA.GTR.HLYDPKNHILPPMDH.TISLQ.GTNKC.SQVG.TAPGTR.HIY.TKLGT | |
Retrocopy | FLLGTNKCASQSDMTASGTRWHLYDPKNHILPPMDHLTISLQLGTNKCDSQVGTTAPGTRWHIYNTKLGT |
Parental | DKCDNSSMSLQMGYTQGANQSGQVFGLGRQIYDPKYCPQGPAA |
DKCDNSSMSLQMGY.QGANQSG.VFGLG.QIYDPKYCPQGP.A | |
Retrocopy | DKCDNSSMSLQMGYMQGANQSG*VFGLGWQIYDPKYCPQGPVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 3 .60 RPM |
ERP005899_muscle | 0 .48 RPM | 28 .35 RPM |
SRP017611_brain | 0 .09 RPM | 3 .97 RPM |
SRP017611_kidney | 0 .24 RPM | 32 .24 RPM |
SRP017611_liver | 0 .00 RPM | 4 .30 RPM |
SRP030211_testis | 0 .20 RPM | 17 .97 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000002068 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020345 | 1 retrocopy | |
Bos taurus | ENSBTAG00000020764 | 1 retrocopy |
retro_btau_612 ,
|
Gorilla gorilla | ENSGGOG00000028153 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000015306 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000009302 | 12 retrocopies |