RetrogeneDB ID: | retro_btau_82 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | X:92648161..92649478(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000039391 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | USP22 | ||
Ensembl ID: | ENSBTAG00000008978 | ||
Aliases: | None | ||
Description: | Ubiquitin carboxyl-terminal hydrolase 22 [Source:UniProtKB/Swiss-Prot;Acc:P0C8Z3] |
Percent Identity: | 84.09 % |
Parental protein coverage: | 77.04 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | EEQRKAWKMQGVGEKFSTWEPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPL |
E.........G.GEK..TWE.TK.ELELL.HNP.RR.I.S..TIGLRGLINLGNTCFMNCIVQALTHTP. | |
Retrocopy | EVSHQQYSVPGLGEKYPTWETTKPELELLGHNPRRRRIASSFTIGLRGLINLGNTCFMNCIVQALTHTPI |
Parental | LRDFFLSDRHRCEMQSPSSCLVCEMSSLFQEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEFLIA |
LRDFFLSDRHRCEM.SP..CLVCEMSSLF.E.YSG..SPH.PYKLLHLVW.HARHLAGY.QQDAHEFLIA | |
Retrocopy | LRDFFLSDRHRCEMPSPELCLVCEMSSLFRELYSGNPSPHVPYKLLHLVWIHARHLAGYRQQDAHEFLIA |
Parental | ALDVLHRHCKGDDNGKKANNPNHCNCIIDQIFTGGLQSDVTCQVCHGVSTTIDPFWDISLDLPGSSTPFW |
ALDVLHRHCKGDD.GK.A.NPNHCNCIIDQIFTGGLQSDVTCQ.CHGVSTTIDP.WDISLDLPGS.T.FW | |
Retrocopy | ALDVLHRHCKGDDAGKAASNPNHCNCIIDQIFTGGLQSDVTCQACHGVSTTIDPCWDISLDLPGSCTSFW |
Parental | PLSPGSESSVVNGESHVSGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTKQLTMKKLPIVACFHL |
P.SPG.ESS.VNGESH..G.TTLTDCLRRFTRPEHLGSSAKIKC..C.SYQESTKQLTM.KLP.VACFH. | |
Retrocopy | PMSPGRESS-VNGESHIPGITTLTDCLRRFTRPEHLGSSAKIKCGSCQSYQESTKQLTMNKLPVVACFHF |
Parental | KRFEHSAKLRRKITTYVSFPLELDMTPFMASSKESRMNGQYQQPTDSLNNDNKYSLFAVVNHQGTLESGH |
KRFEHSAK.RRKITTY.SFPLELDMTPFMASSKESRMNGQ.Q.PT.S.N..NKYSLFAVVNHQGTLESGH | |
Retrocopy | KRFEHSAKQRRKITTYISFPLELDMTPFMASSKESRMNGQLQLPTNSGNDENKYSLFAVVNHQGTLESGH |
Parental | YTSFIRQHKDQWFKCDDAIITKASIADVLDSEGYLLFYHKQFLEYE |
YTSFIR.HKDQWFKCDDA.ITKASI.DVLDSEGYLLFYHKQ.LE.E | |
Retrocopy | YTSFIRHHKDQWFKCDDAVITKASIKDVLDSEGYLLFYHKQVLEHE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 1 .01 RPM | 43 .11 RPM |
ERP005899_muscle | 0 .53 RPM | 208 .62 RPM |
SRP017611_brain | 6 .21 RPM | 287 .92 RPM |
SRP017611_kidney | 23 .18 RPM | 361 .08 RPM |
SRP017611_liver | 0 .76 RPM | 98 .84 RPM |
SRP030211_testis | 8 .11 RPM | 66 .06 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000008978 | 1 retrocopy |
retro_btau_82 ,
|
Canis familiaris | ENSCAFG00000018523 | 1 retrocopy | |
Homo sapiens | ENSG00000124422 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000009998 | 1 retrocopy | |
Mus musculus | ENSMUSG00000042506 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000015801 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008891 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000001934 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023814 | 1 retrocopy |