>retro_cfam_1124
GATGACTCCTTCAACATCTTCAGTGAGACAGATGCTGGCAAGCATGTACCCAGGGCAGTGTCTGTAGACCTGAAACCCAG
AGTCATTGATGAAGTTCACAATGGCACCTACCACCAGCTTTTCCACCCTCAGCAGCTCATCGCAGGCAAGAAAGATGCTG
CCAAGAACTATGCCTAAGGACACTATACCATTGACAAAGAGATCATTGACCTTGTCTTGGAATGAATTTGTTAAGTGGCC
AGTGAGTACACAGGTCTTCAGGGCTTCTTGGTTTTCCACAGTTTTGGAGGGGGAACTGGTTCCAGGTTCACCTCTCTGCT
GATGGAACATCTTTGTCAGTTATGGCAAGAAGTCCAAGTTGGAGTTCTTCATTTACTCTGTCCCCCAGATTTCCACAGCT
GTAGCTAAGCCCTACAGCTCCATCCTCACCACCCACAGCACCCTGGAACACTGAGATTGTGCCTTAATGACAGACAATGA
GGCCATCTATGACATATATCATAGAAACCTTGATATTGAATGCCCAACCTACACTAACCTAAGTAGGTTGATAGGTTAAA
TTGTGTCCTCCATCACTACTTCCCTAAGATTTGATGGAGCCCTGAATGTTGATCTAACAGACCTCCAGACCAACCTAGTG
CTCTATCCCCACTTCTAGTTTCCTCTGGTCATATATATTCCTGTCATTTCTGCTGAGAAAGCCTACCATGAACAGCTTTC
TGTAGGAGAAATCACTGATGCATGCTTTGAGCCAGTCAACCAAATGGTGAAATGTGCCCCTTGCCATGGTAAATACATGG
CTTGCTGCCTGTGGCACCATAGTGACATGGTCCTAAAGATGTCAGCACTGCCATTGCCGCCATCAGGACCAAACATACCA
TCCACTTTGTAGACTGGTGCTCCACTGTGCTTCAAAGTTGGCATTAATTACTAGCCTCCGACTGTGGTACCTGGTAGAGA
CCTGGCCAAAGTATGCAAGCTGTGTGTATACTGAGCAACAGCACAGCCATTGCTGAGGCATAGGCTAACCTGGACCATAA
GTTTGACCTGATATATGCCAAGCATGCCTTTGTTCAGTGGTATGTAAGAAGGGCATGAATGAAGAGAGTTTTCTGAGGCC
CATGAGGACATGGCTGCCCTTGAGAAGGATTATAAGGAGGTTGGA
ORF - retro_cfam_1124 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
60.55 % |
Parental protein coverage: |
98.24 % |
Number of stop codons detected: |
8 |
Number of frameshifts detected |
7 |
Retrocopy - Parental Gene Alignment:
Parental | DASFNTFFCETSTGKHVPRALFMDLEPTVIDGIRAGPRRALFHPEQLVSGKEDAANNYARGRYSVGSGII |
| D.SFN..F.ET..GKHVPRA...DL.P.VID....G....LFHP.QL..GK.DAA.NYA.G.Y.....II |
Retrocopy | DDSFN-IFSETDAGKHVPRAVSVDLKPRVIDEVHNGTYHQLFHPQQLIAGKKDAAKNYA*GHYTIDKEII |
|
Parental | DLVLERIRKLTEQCSGLQGFLVFRSCGGGTGSGFTSLLMEKLSMEY-SRKTKLEFSVYPAPR-ISTAIVE |
| DLVLE.I........GLQGFLVF.S.GGGTGS.FTSLLME.L......R......S....PR.ISTA... |
Retrocopy | DLVLE*IC*VASEYTGLQGFLVFHSFGGGTGSRFTSLLMEHLCQLW<ARSPSWSSSFTLSPR<ISTAVAK |
|
Parental | PYNSILTTHSTIEHSDCTFLVDNEAIYDICHHKLGVECPSYASINRLIGQAVSSITTSLRFEGPLNVDLI |
| PY.SILTTHST.EH.DC....DNEAIYDI.H..L..ECP.Y....RLIG..VSSITTSLRF.G.LNVDL. |
Retrocopy | PYSSILTTHSTLEH*DCALMTDNEAIYDIYHRNLDIECPTYTNLSRLIG*IVSSITTSLRFDGALNVDLT |
|
Parental | EFQTNLVPYPRIHFPTTTFAPIISAESAYREELSVCDITAACFDFSNQLVKCNPRLGKYMACCLLYRGDV |
| ..QTNLV.YP...FP.....P.ISAE.AY.E.LSV..IT.ACF...NQ.VKC.P..GKYMACCL....D. |
Retrocopy | DLQTNLVLYPHF*FPLVIYIPVISAEKAYHEQLSVGEITDACFEPVNQMVKCAPCHGKYMACCLWHHSDM |
|
Parental | V-PKDVNSAIAAMKSRNSVQFVDWC-PTGFKVGINSQPPTVMPGGDLAKV-QRAVCMLSNNTAVVEAWAR |
| V.PKDV..AIAA........FVDWC.P..FKVGIN..PPTV.PG.DLAKV...AVC.LSN.TA..EA.A. |
Retrocopy | V<PKDVSTAIAAIRTKHTIHFVDWC>PLCFKVGINY*PPTVVPGRDLAKV<MQAVCILSNSTAIAEA*AN |
|
Parental | LDHKFDLMYAKRAFLHWYTR-EGMEED-EFSEAREDLAALEKDYEEMG |
| LDHKFDL.YAK.AF..WY.R..GM.E..EFSEA.ED.AALEKDY.E.G |
Retrocopy | LDHKFDLIYAKHAFVQWYVR<KGMNEE<EFSEAHEDMAALEKDYKEVG |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP012049_cerebellum |
0 .00 RPM |
0 .00 RPM |
SRP017611_brain |
0 .00 RPM |
0 .00 RPM |
SRP017611_kidney |
0 .00 RPM |
0 .79 RPM |
SRP017611_liver |
0 .00 RPM |
0 .00 RPM |
Canis familiaris was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_cfam_1124 retrocopy.
Canis familiaris was not studied using FANTOM5 data.
retro_cfam_1124 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_cfam_1124 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
13 retrocopies.