Parental gene: | TUBA1C, ENSCAFG00000008661 |
| Aliases: | None |
| Description: | tubulin, alpha 1c [Source:HGNC Symbol;Acc:20768] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 27:5333819..5371089(-) |
>ENSCAFG00000008661
GTGGAGGAGCTTGGGAGGGATGTGTGCTTTGCGCGCTTGGAATTGGTTCCTTCAAATGGATCCTTTCCGAACCCAAACTG
CAAAACCACTAACTGGATTCTTCTTTACTTCACCAGAAACCTTCAGGTCCCTGCGCTTTTTAACACAGGCACAACCAGCA
AAAGTAGAGAACCTGGCTGTGTTTCAGAGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCAGGTGTCCAGATCGGCAAT
GCCTGCTGGGAGCTCTATTGCCTGGAACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGG
AGATGACTCCTTCAACACCTTCTTCAGTGAGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAGC
CCACAGTCATTGATGAAGTTCGCACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGAT
GCTGCCAATAACTATGCCCGAGGGCACTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAGCT
GGCTGACCAGTGCACGGGTCTTCAGGGCTTCTTGGTTTTCCACAGCTTTGGCGGGGGAACCGGTTCTGGGTTCACCTCCC
TGCTGATGGAACGTCTCTCTGTCGATTATGGCAAGAAGTCCAAGCTAGAGTTCTCCATCTACCCTGCCCCCCAGGTGTCC
ACAGCTGTCGTAGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGA
CAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAGCGCCCAACTTACACTAACCTTAACCGCCTTATTA
GCCAGATTGTGTCCTCCATCACGGCTTCCCTCAGATTCGATGGAGCCCTGAATGTGGATCTGACGGAGTTCCAGACCAAC
CTGGTGCCCTATCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACA
GCTTACCGTAGCAGAGATCACCAATGCATGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAAT
ACATGGCTTGCTGCCTGTTGTACCGTGGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAG
CGCAGCATCCAGTTTGTGGACTGGTGCCCCACTGGCTTCAAAGTGGGCATTAACTACCAGCCTCCCACTGTGGTACCCGG
TGGAGACCTGGCCAAAGTACAGCGAGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGG
ACCACAAGTTTGACCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTT
TCTGAGGCCCGTGAGGACATGGCTGCCCTGGAGAAGGATTATGAGGAGGTTGGAGCGGATAGTGCTGAGGGAGAGGATGA
GGGTGAAGAGTAT
GTGGAGGAGCTTGGGAGGGATGTGTGCTTTGCGCGCTTGGAATTGGTTCCTTCAAATGGATCCTTTCCGAACCCAAACTG
CAAAACCACTAACTGGATTCTTCTTTACTTCACCAGAAACCTTCAGGTCCCTGCGCTTTTTAACACAGGCACAACCAGCA
AAAGTAGAGAACCTGGCTGTGTTTCAGAGCGTGAGTGCATCTCCATCCACGTTGGCCAGGCAGGTGTCCAGATCGGCAAT
GCCTGCTGGGAGCTCTATTGCCTGGAACACGGCATTCAGCCCGATGGCCAGATGCCAAGTGACAAGACCATTGGGGGAGG
AGATGACTCCTTCAACACCTTCTTCAGTGAGACGGGCGCTGGCAAGCATGTGCCCAGGGCAGTGTTTGTAGACCTGGAGC
CCACAGTCATTGATGAAGTTCGCACTGGCACCTACCGCCAGCTCTTCCACCCTGAGCAGCTCATCACAGGCAAGGAAGAT
GCTGCCAATAACTATGCCCGAGGGCACTACACCATTGGCAAGGAGATCATTGACCTTGTCTTGGACCGAATTCGGAAGCT
GGCTGACCAGTGCACGGGTCTTCAGGGCTTCTTGGTTTTCCACAGCTTTGGCGGGGGAACCGGTTCTGGGTTCACCTCCC
TGCTGATGGAACGTCTCTCTGTCGATTATGGCAAGAAGTCCAAGCTAGAGTTCTCCATCTACCCTGCCCCCCAGGTGTCC
ACAGCTGTCGTAGAGCCCTACAACTCCATCCTCACCACCCACACCACCCTGGAGCACTCTGATTGTGCCTTCATGGTAGA
CAATGAGGCCATCTATGACATCTGTCGTAGAAACCTCGATATTGAGCGCCCAACTTACACTAACCTTAACCGCCTTATTA
GCCAGATTGTGTCCTCCATCACGGCTTCCCTCAGATTCGATGGAGCCCTGAATGTGGATCTGACGGAGTTCCAGACCAAC
CTGGTGCCCTATCCCCGCATCCACTTCCCTCTGGCCACATATGCCCCTGTCATCTCTGCTGAGAAAGCCTACCATGAACA
GCTTACCGTAGCAGAGATCACCAATGCATGCTTTGAGCCAGCCAACCAGATGGTGAAATGTGACCCTCGCCATGGTAAAT
ACATGGCTTGCTGCCTGTTGTACCGTGGTGATGTGGTTCCCAAAGATGTCAATGCTGCCATTGCCACCATCAAGACCAAG
CGCAGCATCCAGTTTGTGGACTGGTGCCCCACTGGCTTCAAAGTGGGCATTAACTACCAGCCTCCCACTGTGGTACCCGG
TGGAGACCTGGCCAAAGTACAGCGAGCTGTGTGCATGCTGAGCAACACCACAGCCATTGCTGAGGCCTGGGCTCGCCTGG
ACCACAAGTTTGACCTGATGTATGCCAAGCGTGCCTTTGTTCACTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTT
TCTGAGGCCCGTGAGGACATGGCTGCCCTGGAGAAGGATTATGAGGAGGTTGGAGCGGATAGTGCTGAGGGAGAGGATGA
GGGTGAAGAGTAT
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 6 .27 RPM |
| SRP017611_kidney | 120 .19 RPM |
| SRP017611_liver | 19 .00 RPM |
| SRP012049_cerebellum | 45 .95 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000039992 | possible_ortholog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000005248 | other_paralog | 1 retrogene | |
| Canis familiaris | ENSCAFG00000008640 | within_species_paralog | 8 retrogenes | |
| Canis familiaris | ENSCAFG00000010412 | other_paralog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000008444 | possible_ortholog | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000004068 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000024852 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000028689 | possible_ortholog | 3 retrogenes | |
| Macropus eugenii | ENSMEUG00000010779 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000028032 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000009435 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_960 | 80.04 | 87.48 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_978 | 69.48 | 59.49 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000008661 retrocopies