RetrogeneDB ID: | retro_cfam_1147 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 24:25415797..25416088(-) | ||
Located in intron of: | ENSCAFG00000008573 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MSRB2 | ||
Ensembl ID: | ENSCAFG00000004215 | ||
Aliases: | None | ||
Description: | methionine sulfoxide reductase B2 [Source:HGNC Symbol;Acc:17061] |
Percent Identity: | 64.36 % |
Parental protein coverage: | 55. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | DAGSLTKHELPLTKSEWQKKLTPEQ-FYVTREKGTEPPFSGVYLNNKESGMYH-CVCCDSPLFSSEKKYC |
D.G.LT..E..L..SE.QKK.TPEQ.FYV.REKG.E.PFSG..L.N.ESG.Y..CVC.DS...SS..KYC | |
Retrocopy | DTGNLTQCEPSLAASE*QKKSTPEQ>FYVMREKGKELPFSGINLHNMESGKYA<CVCYDS--YSSVSKYC |
Parental | SGTGWPAFSEAHGTSGSDERDTGILRRVDTS |
SGTGWP.FSE.H..SGSD...TG.LR.VDTS | |
Retrocopy | SGTGWPSFSETHRMSGSDKSSTGMLRCVDTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 12 .10 RPM |
SRP017611_brain | 0 .00 RPM | 34 .30 RPM |
SRP017611_kidney | 0 .00 RPM | 51 .11 RPM |
SRP017611_liver | 0 .00 RPM | 9 .79 RPM |
Species | RetrogeneDB ID |
---|---|
Equus caballus | retro_ecab_593 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006388 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004215 | 1 retrocopy |
retro_cfam_1147 ,
|
Equus caballus | ENSECAG00000013072 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012892 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000002148 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011077 | 1 retrocopy |